genome.fa.s360.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold360
Parameters: 2 7 7 80 10 50 1000
Length:  397502

Tables:   1   2   3   

This is table  3  of  3  ( 349 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290535--290595	26	2.3	27	86	8	81	27	0	0	72	0.85
290590--290642	26	2.0	27	82	10	65	45	0	0	54	0.99
290848--290884	4	9.8	4	94	5	60	24	0	0	75	0.80
291147--291222	25	3.1	25	81	11	77	39	1	2	56	1.21
291179--291223	23	2.0	23	90	0	72	46	2	0	51	1.13
292649--292698	15	3.5	15	83	5	59	60	0	0	40	0.97
293255--293285	15	2.1	15	93	0	53	48	3	12	35	1.58
294133--294275	71	2.0	70	89	4	216	38	25	7	27	1.83
300516--300546	2	15.5	2	93	0	53	48	3	48	0	1.17
300527--300596	35	2.0	35	94	0	122	31	8	51	8	1.63
300957--301093	41	3.3	41	85	7	161	53	6	1	38	1.36
301038--301513	53	8.8	54	80	8	470	52	5	1	40	1.34
301038--301469	157	2.7	159	82	7	514	53	5	1	40	1.33
301415--301600	86	2.1	86	84	7	228	48	4	2	44	1.36
301507--301768	51	5.1	50	74	12	158	53	3	1	41	1.27
305045--305069	13	1.9	13	100	0	50	36	16	16	32	1.90
305122--305186	19	3.8	18	75	24	77	40	15	12	32	1.84
305117--305184	32	2.1	32	94	5	120	38	16	11	33	1.85
305141--305165	13	1.9	13	100	0	50	32	16	16	36	1.90
306341--306383	22	2.0	22	90	0	68	41	11	9	37	1.74
306593--306649	22	2.6	22	82	0	78	36	7	10	45	1.66
306917--306963	22	2.1	22	88	0	67	40	6	6	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307060--307309	52	4.9	50	86	5	297	40	3	4	52	1.39
307061--307308	103	2.5	102	86	6	337	40	3	4	51	1.39
307481--307702	50	4.3	54	76	18	213	36	1	6	54	1.36
307492--307680	101	1.9	103	84	8	262	40	1	7	51	1.37
310138--310170	2	16.5	2	93	0	57	51	3	0	45	1.16
310473--310515	4	10.8	4	79	0	50	65	0	0	34	0.93
310481--310531	2	25.5	2	83	0	66	58	0	0	41	0.98
310477--310527	8	6.4	8	97	0	93	60	0	0	39	0.97
316053--316137	44	2.0	43	95	2	152	40	14	17	28	1.88
321913--322001	31	2.9	31	87	0	115	16	38	19	25	1.92
321991--322060	21	3.2	21	75	11	77	34	34	21	10	1.87
321996--322059	24	2.8	23	73	15	62	35	32	21	9	1.86
322108--322171	32	2.0	32	81	6	76	37	31	15	15	1.89
322941--322988	13	3.7	13	74	20	55	77	2	0	20	0.88
322957--322988	16	2.0	16	93	0	55	78	3	0	18	0.89
327423--327467	22	2.0	23	82	4	56	33	22	2	42	1.66
335582--336510	42	22.2	42	81	5	961	13	29	18	38	1.89
336986--337057	30	2.4	30	84	9	94	69	0	5	25	1.10
337679--337765	31	2.8	31	84	5	106	17	35	18	28	1.93
338095--338153	29	2.0	29	96	0	109	44	13	22	20	1.86
340920--341097	98	1.9	96	89	7	227	50	16	10	22	1.75
342233--342273	20	2.0	20	86	9	57	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344184--344211	6	4.7	6	100	0	56	53	0	0	46	1.00
344204--344250	20	2.3	20	78	7	51	51	0	4	44	1.21
344519--344546	6	4.7	6	100	0	56	14	0	0	85	0.59
344843--344871	13	2.2	13	100	0	58	48	0	0	51	1.00
345915--345947	11	3.1	11	95	4	59	57	0	0	42	0.98
346762--346802	21	2.0	21	90	0	64	60	0	2	36	1.10
346695--346802	57	1.9	57	81	11	132	55	1	1	40	1.21
347128--347159	14	2.3	14	100	0	64	68	0	0	31	0.90
347445--347542	32	3.1	32	78	8	103	52	2	0	45	1.12
347771--347860	33	2.8	30	80	14	92	35	0	6	57	1.25
347786--347860	16	4.6	16	76	14	64	34	0	8	57	1.28
347800--347860	16	3.9	15	81	14	70	37	0	6	55	1.26
347771--347860	32	2.8	33	86	8	114	35	0	6	57	1.25
348567--348628	15	4.3	14	78	11	63	41	0	0	58	0.98
348578--348615	14	2.8	13	88	11	58	36	0	0	63	0.95
349729--349770	14	3.1	14	83	12	52	47	0	0	52	1.00
351424--351471	18	2.7	17	76	20	53	45	0	6	47	1.27
351526--351594	16	4.3	16	86	0	102	52	1	1	44	1.19
351520--351603	16	5.3	15	77	8	60	51	3	2	42	1.32
351520--351594	32	2.3	32	93	0	123	52	1	2	44	1.23
352135--352180	2	23.0	2	100	0	92	50	0	0	50	1.00
352473--352544	35	2.1	35	91	0	117	54	0	2	43	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352808--352838	6	5.2	6	96	0	53	0	32	19	48	1.49
356052--356257	103	2.0	103	88	0	304	22	17	16	44	1.87
359769--359818	22	2.3	22	86	6	66	42	0	2	56	1.11
360911--361055	44	3.3	44	71	18	133	52	7	2	37	1.42
360894--361029	39	3.3	39	70	18	112	49	7	2	40	1.46
360890--361058	86	2.0	86	94	2	295	50	7	2	39	1.42
361657--361724	32	2.2	31	84	7	84	36	2	2	57	1.29
365817--365864	17	3.1	17	77	17	59	31	16	0	52	1.45
367388--367427	18	2.3	18	82	4	55	40	5	0	55	1.22
369044--369091	24	2.0	24	84	8	62	52	10	4	33	1.55
369273--369310	2	19.0	2	94	0	67	47	0	0	52	1.00
369572--369613	2	21.0	2	100	0	84	50	0	0	50	1.00
370827--370880	19	2.8	19	78	13	58	31	0	1	66	1.02
370761--370896	12	11.6	12	67	22	58	36	0	0	63	1.00
370766--370863	42	2.3	42	84	8	117	35	0	1	63	1.02
370766--370891	44	3.0	39	72	18	101	35	0	0	63	1.00
370766--370888	46	2.8	42	70	25	94	35	0	0	63	1.00
371212--371267	20	2.9	20	68	7	53	48	0	0	51	1.00
371216--371312	43	2.3	43	83	7	117	44	0	0	55	0.99
371259--371312	21	2.5	22	77	19	69	40	0	0	59	0.98
371246--371315	20	3.1	23	75	23	69	44	0	0	55	0.99
371770--371825	20	2.9	18	74	10	58	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371782--371823	19	2.4	16	88	11	57	57	0	2	40	1.12
373597--373639	22	2.0	22	86	9	61	53	0	0	46	1.00
374205--374252	16	2.9	16	93	3	78	54	2	0	43	1.12
374761--374819	22	2.7	22	79	10	75	55	0	1	42	1.09
375094--375163	22	3.1	23	76	13	74	54	0	0	45	0.99
375096--375144	21	2.4	21	83	10	66	51	0	0	48	1.00
375120--375198	30	2.7	28	80	11	70	56	2	1	39	1.21
375871--375980	55	2.0	54	94	1	193	39	10	12	38	1.77
376771--376808	13	3.0	13	84	3	51	44	0	2	52	1.14
376770--376816	12	3.8	12	78	13	51	44	2	2	51	1.25
376784--376817	13	2.6	13	85	0	50	41	2	2	52	1.31
384857--384913	20	2.8	21	81	2	71	43	14	14	28	1.83
386051--386092	3	14.0	3	100	0	84	66	0	0	33	0.92
386739--386798	20	2.9	20	82	5	75	40	8	16	35	1.79
396011--396055	22	2.0	22	95	0	81	26	22	13	37	1.91
396809--397352	92	5.9	92	83	9	575	31	16	25	26	1.97
397100--397346	48	5.4	48	73	19	190	31	17	25	25	1.97
396809--397358	182	3.0	181	81	10	559	31	16	25	26	1.97
396858--397306	134	3.3	136	71	22	379	31	17	24	26	1.97
397345--397502	31	5.0	32	78	9	164	18	17	33	29	1.95
397345--397502	62	2.5	63	83	8	187	18	17	33	29	1.95

Tables:   1   2   3

The End!