genome.fa.s37.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold37
Parameters: 2 7 7 80 10 50 1000
Length:  836391

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147398--147439	21	2.0	21	90	4	66	35	0	7	57	1.26
147399--147436	10	3.7	10	86	6	58	36	0	2	60	1.11
149261--149300	2	20.0	2	100	0	80	50	0	0	50	1.00
149408--149454	19	2.4	20	92	3	78	38	2	0	59	1.09
149829--149874	24	1.9	24	90	0	74	60	0	4	34	1.16
150566--150598	2	17.0	2	93	6	59	51	0	0	48	1.00
151620--151840	34	6.5	33	82	9	266	40	26	7	24	1.82
151622--151840	68	3.2	67	85	3	296	40	26	7	25	1.82
151620--151840	102	2.2	101	89	1	352	40	26	7	24	1.82
156254--156474	34	6.5	33	79	10	232	41	25	6	26	1.80
156254--156474	102	2.2	102	86	4	320	41	25	6	26	1.80
156560--156590	16	1.9	16	100	0	62	41	0	0	58	0.98
157811--157853	18	2.3	18	84	11	52	46	0	0	53	1.00
161550--161594	17	2.9	17	81	15	53	46	2	0	51	1.13
164322--164347	2	13.0	2	100	0	52	50	0	0	50	1.00
164773--164798	7	3.7	7	100	0	52	73	0	0	26	0.84
165838--165875	4	9.0	4	88	11	58	52	0	0	47	1.00
165832--165875	9	5.1	9	91	5	65	54	0	0	45	0.99
166462--166583	35	3.7	33	79	11	126	61	0	0	36	1.08
168729--168759	2	15.5	2	100	0	62	51	0	0	48	1.00
175646--175678	2	16.5	2	100	0	66	51	0	48	0	1.00
179436--179501	32	2.1	32	94	0	114	43	9	28	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189214--189278	26	2.6	25	71	26	64	35	1	18	44	1.59
189672--189716	19	2.3	21	81	11	60	35	0	0	64	0.94
192580--192646	33	2.0	33	82	0	80	23	13	17	44	1.85
196939--196991	11	4.6	11	76	17	54	45	0	0	54	0.99
196944--196992	24	2.0	24	84	7	64	48	0	0	51	1.00
196957--197005	14	3.4	14	83	10	55	48	2	0	48	1.12
197520--197581	29	2.3	25	84	13	79	61	3	3	32	1.28
197533--197583	13	3.6	14	79	12	52	60	3	3	31	1.33
197513--197586	28	2.4	33	77	22	81	62	2	2	32	1.23
197552--197598	19	2.3	21	82	10	62	61	2	2	34	1.20
198106--198191	9	9.3	9	70	16	52	40	1	1	56	1.14
198104--198195	34	2.8	32	82	9	107	43	1	1	54	1.14
198157--198204	19	2.8	17	81	9	53	45	0	0	54	0.99
198137--198182	23	2.0	23	91	8	76	45	0	0	54	0.99
200483--200516	7	4.7	7	96	3	59	82	0	2	14	0.79
202394--202425	5	6.8	5	86	13	50	59	0	0	40	0.97
202389--202425	14	2.6	14	95	0	65	56	2	0	40	1.13
202900--202942	20	2.2	20	95	4	79	60	0	0	39	0.97
204309--204355	16	2.7	18	80	16	62	46	0	2	51	1.13
204666--204702	10	3.3	12	82	17	53	59	0	0	40	0.97
210413--210437	2	12.5	2	100	0	50	52	0	48	0	1.00
211341--211442	26	4.1	25	74	13	77	38	0	1	58	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211926--211966	21	2.0	21	90	9	66	58	0	0	41	0.98
212405--212475	18	4.1	17	73	12	56	40	1	0	57	1.07
212434--212494	16	4.2	14	74	13	52	42	0	0	57	0.98
212453--212535	43	2.0	43	81	11	100	42	1	0	56	1.07
212770--212798	3	9.7	3	100	0	58	68	0	0	31	0.89
219207--219252	20	2.2	22	84	7	60	54	0	0	45	0.99
219217--219374	40	3.9	41	72	19	111	52	1	1	44	1.20
219203--219333	29	4.3	28	76	18	88	53	0	1	44	1.15
219203--219414	16	13.2	15	71	20	119	51	0	1	45	1.18
219369--219445	21	3.7	21	80	13	79	50	0	1	48	1.09
219228--219429	82	2.5	81	78	8	205	51	0	1	45	1.19
219405--219451	15	3.1	15	78	6	58	55	0	0	44	0.99
219337--219430	36	2.6	35	73	18	84	50	0	2	47	1.13
219388--219451	31	2.1	30	91	2	101	53	0	0	46	1.00
219336--219446	52	2.1	52	83	9	138	50	0	1	47	1.11
219385--219453	16	4.4	16	74	17	63	53	0	0	46	1.00
220879--220923	19	2.4	19	81	7	56	53	0	0	46	1.00
233341--233402	17	3.4	17	80	17	54	46	0	1	51	1.10
235117--235169	17	2.6	21	72	27	60	52	1	3	41	1.30
235117--235170	18	2.6	23	67	29	57	53	1	3	40	1.29
237018--237082	5	13.2	5	75	18	57	46	0	0	53	1.00
237018--237096	26	3.1	25	77	14	81	48	0	1	50	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
237031--237098	26	2.7	24	78	13	82	51	0	1	47	1.09
237243--237284	16	2.6	16	76	0	57	61	0	0	38	0.96
237672--237779	24	4.5	24	75	11	89	58	0	0	40	1.04
237707--237809	21	5.0	21	70	21	74	59	0	0	40	0.98
237893--238026	69	1.9	70	86	7	193	17	15	22	44	1.86
239222--239247	11	2.4	11	100	0	52	23	0	0	76	0.78
239830--239886	25	2.4	23	83	11	71	42	0	1	56	1.10
240229--240271	21	2.0	22	81	4	52	48	0	2	48	1.14
241630--241659	2	15.0	2	100	0	60	50	0	0	50	1.00
241994--242021	14	2.0	14	100	0	56	42	0	0	57	0.99
264813--264839	14	1.9	14	100	0	54	59	0	11	29	1.32
264928--264959	16	2.0	16	93	0	55	40	0	0	59	0.97
264946--265076	43	3.0	43	70	12	124	37	2	7	52	1.43
264912--265076	86	1.9	85	92	1	276	38	1	6	53	1.36
265346--265400	26	2.0	29	82	10	71	49	0	0	50	1.00
269359--269391	13	2.6	13	90	4	50	39	0	0	60	0.97
272404--272438	2	17.5	2	100	0	70	51	0	0	48	1.00
273596--273646	12	4.2	12	82	9	68	27	0	1	70	0.98
273595--273642	24	2.0	25	91	4	80	27	0	2	70	0.98
273877--273935	23	2.5	22	73	10	55	44	1	0	54	1.10
273957--273995	19	2.0	19	90	5	60	58	0	0	41	0.98
273993--274044	26	2.0	27	84	3	70	46	1	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276028--276244	113	1.9	113	91	1	355	29	25	15	29	1.96
281061--281727	112	6.0	111	83	5	717	23	29	13	33	1.93
287882--287956	37	2.0	37	94	0	132	50	5	13	30	1.63
293938--294004	21	3.0	21	82	14	64	47	1	1	49	1.19
294094--294135	15	2.7	15	92	3	66	52	0	2	45	1.13
294836--294868	13	2.4	14	85	5	50	39	0	0	60	0.97
295268--295302	16	2.1	17	89	5	54	25	2	0	71	1.00
295545--295632	30	2.8	31	80	13	101	32	14	3	48	1.61
296336--296376	22	1.9	21	90	5	64	41	0	0	58	0.98
296590--296625	17	2.1	17	94	0	63	50	0	0	50	1.00
297482--297524	18	2.3	19	84	4	61	39	0	2	58	1.11
302790--302845	26	2.0	28	83	10	71	51	0	0	48	1.00
302824--302867	19	2.3	19	80	4	52	56	0	0	43	0.99
303207--303262	26	2.2	26	84	12	71	48	0	0	51	1.00
304569--304622	17	3.2	18	77	17	62	55	0	0	44	0.99
305059--305091	15	2.2	15	94	0	57	57	0	0	42	0.98
305032--305093	11	5.3	11	71	21	54	50	0	0	50	1.00
305032--305099	25	2.8	25	80	12	88	52	0	0	47	1.00
305072--305125	21	2.5	20	79	8	54	46	1	5	46	1.37
306046--306104	14	4.5	14	69	14	54	45	0	0	54	0.99
306081--306150	15	4.6	15	70	19	56	55	0	0	44	0.99
306100--306164	28	2.4	26	80	7	67	55	0	1	43	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306538--306567	2	15.0	2	100	0	60	50	0	0	50	1.00
306919--306967	21	2.3	21	82	10	55	59	0	4	36	1.17
307328--307371	22	2.1	21	83	8	54	36	11	4	47	1.60
307773--307812	21	2.0	19	85	9	53	50	2	0	47	1.14
307877--307956	19	4.1	19	74	19	67	38	0	0	61	0.96
307899--307946	13	4.2	12	82	15	57	33	0	0	66	0.92
309530--309570	16	2.4	18	76	19	52	46	0	0	53	1.00
309620--309661	21	2.1	19	86	13	57	59	0	0	40	0.97
309609--309706	51	1.9	51	85	8	137	45	0	0	54	1.00
310198--310232	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1   2   3   4   5   6