genome.fa.s37.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold37
Parameters: 2 7 7 80 10 50 1000
Length:  836391

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 678 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600865--600897	17	1.9	17	100	0	66	33	0	0	66	0.92
604811--604857	6	7.7	6	78	21	53	76	0	0	23	0.78
604812--604858	14	3.1	14	80	16	58	74	0	0	25	0.82
604804--604857	15	3.5	16	80	16	69	74	0	0	25	0.83
605976--606009	2	17.0	2	100	0	68	50	0	0	50	1.00
606706--606751	3	15.7	3	95	4	85	69	0	0	30	0.89
609403--609476	22	3.3	22	68	17	53	51	1	0	47	1.09
610313--610358	14	3.1	14	87	9	56	43	0	0	56	0.99
610997--611057	24	2.6	22	80	14	68	52	8	4	34	1.53
611108--611178	36	2.0	34	86	5	97	59	4	2	33	1.31
611188--611236	22	2.2	22	82	7	55	46	8	8	36	1.63
611194--611246	22	2.5	20	77	17	52	45	7	9	37	1.65
612824--612873	25	2.0	25	92	0	82	50	28	0	22	1.49
615682--615719	2	19.5	2	94	5	69	47	0	0	52	1.00
616611--616664	19	2.8	19	74	2	54	51	0	0	48	1.00
616626--616684	28	2.0	31	84	12	81	54	0	0	45	0.99
616606--616700	39	2.4	41	79	13	110	55	0	1	43	1.06
618898--618928	15	2.1	15	93	0	53	41	0	12	45	1.42
619228--619264	2	18.5	2	100	0	74	48	0	0	51	1.00
621009--621083	22	3.4	22	67	12	55	46	0	1	52	1.09
621368--621400	2	16.5	2	100	0	66	51	0	0	48	1.00
623724--623777	26	2.1	26	82	0	72	38	1	3	55	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624778--624828	5	10.6	5	83	8	52	35	5	0	58	1.22
625640--625679	2	20.0	2	100	0	80	50	0	0	50	1.00
626401--626426	2	13.0	2	100	0	52	50	0	0	50	1.00
628455--628503	24	2.0	26	88	8	75	42	0	0	57	0.99
628476--628545	17	4.4	17	71	14	67	40	0	0	60	0.97
629404--629439	17	2.1	18	90	10	58	66	0	0	33	0.92
629392--629447	23	2.4	23	74	8	60	66	3	3	26	1.25
629998--630039	21	2.0	20	86	9	57	35	9	2	52	1.47
632592--632637	20	2.4	19	82	13	51	23	6	0	69	1.11
635863--635903	2	20.5	2	84	0	55	53	0	2	43	1.13
638477--638508	16	1.9	17	93	6	57	68	0	3	28	1.04
638950--638996	21	2.4	19	82	7	58	61	0	2	36	1.08
639398--639447	25	2.0	26	84	4	66	52	8	0	40	1.31
639789--639837	13	4.0	12	78	21	57	42	0	0	57	0.99
640547--640694	80	1.9	79	88	4	226	59	2	9	28	1.42
643560--643594	13	2.6	13	90	4	52	71	0	8	20	1.11
647339--647366	2	14.0	2	100	0	56	50	50	0	0	1.00
652196--652235	15	2.5	17	92	8	66	47	0	2	50	1.14
655596--655645	18	2.8	18	75	3	57	54	0	2	44	1.11
655705--655734	6	5.0	6	100	0	60	16	0	0	83	0.65
655703--655748	18	2.6	18	83	10	51	23	0	0	76	0.79
656532--656614	30	2.7	31	79	18	95	42	13	2	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657700--657741	19	2.2	19	83	12	50	50	2	7	40	1.43
660578--660651	19	4.1	17	76	10	67	45	1	1	51	1.18
663247--663273	5	5.4	5	100	0	54	81	0	18	0	0.69
664165--664227	28	2.2	28	91	0	99	42	9	0	47	1.36
664893--664918	3	8.7	3	100	0	52	30	0	0	69	0.89
666241--666281	3	13.7	3	100	0	82	34	0	0	65	0.93
668189--668222	13	2.7	13	86	4	52	67	8	14	8	1.41
668619--668662	20	2.2	20	84	8	54	54	0	2	43	1.12
668808--668892	16	5.3	16	80	2	91	38	1	4	55	1.29
669264--669311	23	2.2	21	82	14	53	35	4	0	60	1.16
671032--671068	16	2.2	17	90	4	58	40	0	2	56	1.13
673198--673236	3	13.3	3	89	5	62	35	0	0	64	0.94
674689--674750	2	33.0	2	78	18	62	51	0	3	45	1.17
675159--675205	21	2.2	21	100	0	94	51	4	4	40	1.41
675287--675350	17	3.9	17	75	21	64	35	0	0	64	0.94
675287--675332	17	2.6	18	86	3	67	32	0	0	67	0.91
676627--676692	17	4.1	15	76	17	62	53	0	0	46	1.00
676864--676894	11	2.8	11	95	0	53	58	0	3	38	1.15
678282--678319	19	2.0	19	85	10	51	63	0	2	34	1.09
679276--679303	2	14.0	2	100	0	56	50	0	0	50	1.00
680199--680263	21	3.0	22	72	18	64	52	0	0	47	1.00
682539--682584	24	2.0	23	86	4	65	15	4	10	69	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682540--682590	24	2.2	23	82	3	57	15	3	13	66	1.39
682961--682996	16	2.1	18	90	10	58	55	2	5	36	1.38
684633--684680	24	1.9	25	83	8	62	31	2	0	66	1.03
685786--685863	24	3.3	22	75	20	68	38	0	2	58	1.12
685815--685863	11	4.2	12	75	17	50	38	0	0	61	0.96
685816--685861	12	3.8	12	76	18	51	36	0	0	63	0.95
690208--690234	2	13.5	2	100	0	54	51	0	0	48	1.00
691701--691743	20	2.1	20	82	4	50	46	0	6	46	1.30
692292--692342	20	2.6	21	82	14	65	60	0	0	39	0.97
693160--693186	3	9.0	3	100	0	54	66	0	0	33	0.92
693439--693469	15	2.0	16	93	6	55	45	0	0	54	0.99
695778--695820	18	2.4	17	84	7	50	2	20	0	76	0.89
696568--696611	23	2.0	23	86	4	63	59	0	0	40	0.98
696909--696937	13	2.1	14	93	6	51	34	0	0	65	0.93
697256--697320	29	2.3	28	81	5	85	58	1	1	38	1.17
699110--699149	22	1.9	20	85	10	53	5	40	7	47	1.54
699511--699543	16	2.1	16	88	11	50	51	0	0	48	1.00
699747--699802	20	2.7	20	78	10	60	35	1	0	62	1.06
699750--699819	26	2.8	25	74	19	67	32	1	0	65	1.01
699750--699809	14	4.4	14	77	22	58	31	1	0	66	1.01
700130--700210	15	5.5	15	68	18	53	35	1	2	60	1.18
701085--701137	13	4.1	13	77	15	56	28	1	0	69	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701084--701144	27	2.2	29	83	13	85	29	1	0	68	0.99
701084--701145	19	3.2	19	78	19	65	29	1	0	69	0.98
701591--701638	18	2.7	18	87	6	62	41	2	0	56	1.11
701763--701815	16	3.4	16	80	12	65	49	0	0	50	1.00
701775--701832	25	2.3	26	82	8	75	51	0	0	48	1.00
701786--702037	83	3.1	84	88	5	347	42	4	6	45	1.51
702896--702926	2	15.5	2	100	0	62	51	0	48	0	1.00
708727--708757	16	1.9	16	93	0	53	48	16	12	22	1.80
722252--722332	40	2.0	40	97	0	153	23	17	11	48	1.79
728344--728381	2	19.0	2	100	0	76	50	0	0	50	1.00
728491--728517	4	6.8	4	100	0	54	77	0	0	22	0.76
730846--730873	2	14.0	2	100	0	56	50	0	0	50	1.00
731946--731974	2	14.5	2	100	0	58	0	51	0	48	1.00
732897--732957	12	5.2	12	82	7	72	39	0	11	49	1.39
732897--732957	18	3.5	18	88	4	81	39	0	11	49	1.39
732897--732946	6	8.3	6	97	0	82	38	0	12	50	1.40
733874--733924	6	9.2	6	79	16	56	29	0	0	70	0.87
733872--733946	38	2.0	38	81	5	89	32	1	1	65	1.09
734148--734181	2	17.0	2	100	0	68	50	0	0	50	1.00
735429--735464	19	1.9	18	88	5	54	41	5	0	52	1.24
736456--736497	3	14.0	3	100	0	84	66	0	0	33	0.92
736723--736767	22	2.0	22	82	0	54	71	2	0	26	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737570--737706	74	1.9	73	84	7	188	51	16	8	22	1.72
738694--738722	2	14.5	2	100	0	58	51	0	0	48	1.00
739519--739558	2	20.0	2	100	0	80	50	0	0	50	1.00
740795--740824	2	15.0	2	100	0	60	50	0	0	50	1.00
742333--742371	3	13.0	3	100	0	78	66	0	0	33	0.92
745572--745624	16	3.2	17	71	7	56	50	1	1	45	1.23
754628--754677	24	2.0	25	82	17	61	52	12	2	34	1.50
755041--755100	18	3.2	19	76	9	61	55	0	1	43	1.10
755086--755130	15	3.1	15	87	3	56	51	0	0	48	1.00
757107--757147	2	20.5	2	94	0	73	46	0	2	51	1.14

Tables:   1   2   3   4   5   6