genome.fa.s371.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold371
Parameters: 2 7 7 80 10 50 1000
Length:  1142270

Tables:   1   2   3   

This is table  3  of  3  ( 331 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971025--971093	22	3.1	22	67	8	68	30	11	17	40	1.85
970998--971099	44	2.3	44	91	1	159	32	11	17	38	1.86
971629--971703	22	3.5	22	80	8	66	36	10	12	41	1.77
974136--974161	13	2.0	13	100	0	52	38	15	15	30	1.88
978224--978254	15	2.1	15	93	0	53	48	16	22	12	1.80
980277--980359	25	3.5	24	73	17	93	32	14	14	38	1.86
980302--980379	20	3.7	20	74	15	84	29	14	12	43	1.82
980255--980380	45	2.8	45	96	0	225	30	14	14	41	1.85
980366--980391	13	2.0	13	100	0	52	30	15	15	38	1.88
982932--982957	13	2.0	13	100	0	52	38	15	15	30	1.88
987097--987332	79	3.0	79	78	4	201	34	14	23	27	1.94
987154--987335	79	2.3	79	81	0	211	36	13	23	27	1.92
988382--988438	21	2.7	21	97	0	105	33	10	19	36	1.86
988494--988561	19	3.9	19	76	21	76	36	11	13	38	1.81
988515--988539	13	1.9	13	100	0	50	36	16	16	32	1.90
988496--988558	32	2.0	32	93	0	108	36	12	14	36	1.84
988601--988626	13	2.0	13	100	0	52	30	15	15	38	1.88
988581--988647	33	2.0	33	88	0	98	25	14	16	43	1.86
990966--991098	52	2.6	52	79	5	144	30	26	11	32	1.91
991082--991158	28	2.8	28	87	0	100	23	33	19	23	1.97
991033--991237	107	1.9	107	82	5	252	26	28	15	29	1.96
1003712--1003765	17	3.2	17	86	0	63	87	7	5	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1004744--1005476	55	13.3	55	91	4	1137	28	30	20	20	1.98
1005324--1005408	29	3.0	29	63	16	70	25	34	21	18	1.96
1008268--1008400	52	2.6	52	79	5	144	30	26	11	32	1.91
1008384--1008460	28	2.8	28	87	0	100	23	33	19	23	1.97
1008335--1008539	107	1.9	107	82	5	252	26	28	15	29	1.96
1011071--1011120	19	2.6	19	90	0	73	40	16	10	34	1.81
1012025--1012372	55	6.2	55	94	2	538	22	21	28	27	1.99
1011900--1012372	110	4.1	112	88	6	643	23	20	28	27	1.99
1012178--1012320	26	5.3	26	65	15	92	20	20	31	26	1.98
1011892--1012372	165	2.8	165	86	7	633	23	20	28	27	1.99
1023570--1023612	21	2.0	21	90	0	68	67	18	0	13	1.23
1025663--1025907	79	3.1	78	79	4	260	33	14	25	26	1.94
1028198--1028239	20	2.1	20	86	8	59	35	7	21	35	1.81
1028329--1028412	19	4.6	19	69	20	63	36	16	10	35	1.84
1028346--1028370	13	1.9	13	100	0	50	32	16	16	36	1.90
1028321--1028391	32	2.2	32	92	0	115	39	16	8	35	1.79
1031355--1031393	20	2.0	20	94	0	69	38	15	15	30	1.88
1031348--1031373	13	2.0	13	100	0	52	38	15	15	30	1.88
1031422--1031474	19	2.7	19	78	13	54	33	16	13	35	1.88
1033383--1033515	53	2.5	53	89	3	189	36	1	3	58	1.25
1033894--1033965	20	3.6	20	82	0	99	37	13	16	31	1.88
1033894--1033986	40	2.3	41	94	1	161	40	12	16	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038099--1038129	15	2.1	15	93	0	53	48	16	22	12	1.80
1040209--1040246	13	2.9	13	96	0	67	34	18	15	31	1.92
1042087--1042182	48	2.0	48	100	0	192	37	8	29	25	1.85
1042736--1042807	20	3.6	20	84	0	108	36	13	18	31	1.90
1042736--1042828	40	2.3	41	96	1	170	39	12	17	30	1.87
1042867--1042892	13	2.0	13	100	0	52	38	15	15	30	1.88
1043706--1043781	35	2.2	35	82	0	98	40	0	9	50	1.34
1043823--1043951	50	2.5	50	85	10	174	41	1	2	54	1.22
1044593--1044624	17	1.9	17	93	6	57	46	6	0	46	1.27
1044620--1044659	19	2.0	20	85	4	55	47	0	0	52	1.00
1045104--1045134	12	2.6	12	94	0	53	45	0	0	54	0.99
1045120--1045180	32	1.9	32	86	0	86	44	0	1	54	1.10
1045188--1045240	23	2.3	22	78	15	54	33	1	1	62	1.17
1045185--1045235	12	3.7	14	78	19	54	31	1	1	64	1.15
1045187--1045253	26	2.4	27	80	14	75	34	1	2	61	1.20
1050577--1050873	155	1.9	156	83	6	388	38	15	18	27	1.92
1063085--1063130	21	2.2	20	81	11	58	32	19	4	43	1.71
1069294--1069341	17	2.9	17	76	14	55	54	8	0	37	1.31
1071812--1071864	20	2.7	21	85	11	76	32	13	11	43	1.79
1071893--1071956	21	3.1	21	77	4	85	29	20	10	39	1.87
1073777--1073801	13	1.9	13	100	0	50	32	16	20	32	1.94
1077088--1077501	207	2.0	207	97	0	783	26	22	15	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080117--1080142	13	2.0	13	100	0	52	30	15	15	38	1.88
1080097--1080160	32	2.0	33	90	3	103	28	14	15	42	1.86
1080212--1080264	20	2.7	20	100	0	106	33	20	15	30	1.93
1080891--1080954	31	2.1	31	100	0	128	37	17	15	29	1.91
1086482--1086658	87	2.0	87	94	0	309	32	23	15	28	1.95
1086582--1086787	102	2.0	102	90	0	322	30	19	17	33	1.95
1088559--1088803	121	2.0	121	99	0	481	33	14	22	29	1.94
1090135--1090160	2	13.0	2	100	0	52	50	0	0	50	1.00
1090543--1090580	20	1.9	20	94	0	67	23	5	0	71	1.07
1090677--1090708	2	16.0	2	100	0	64	50	0	0	50	1.00
1097325--1097498	85	2.0	85	96	0	321	33	8	2	55	1.43
1105394--1105430	13	2.8	13	87	0	56	37	16	10	35	1.83
1106088--1106187	33	3.0	33	97	0	191	21	29	21	29	1.98
1107137--1107190	20	2.7	20	85	8	74	35	14	18	31	1.91
1110188--1110243	21	2.6	22	94	5	105	37	10	25	26	1.88
1110231--1110261	10	3.1	10	90	0	53	41	6	29	22	1.78
1110285--1110421	53	2.6	53	89	1	202	27	16	17	38	1.91
1110391--1110461	20	3.5	20	77	11	74	29	14	16	39	1.88
1110501--1110541	21	2.0	21	85	9	57	39	9	12	39	1.76
1121136--1121191	19	2.9	19	89	2	76	37	16	17	28	1.91
1125109--1125188	23	3.5	23	75	8	67	55	1	2	41	1.21
1125712--1126391	149	4.6	147	77	7	622	34	18	21	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1126650--1127034	165	2.3	163	81	7	458	41	12	11	34	1.80
1126751--1127076	165	2.0	165	79	8	360	40	13	11	33	1.81
1129316--1129487	86	2.0	86	94	1	301	43	15	8	33	1.77

Tables:   1   2   3

The End!