genome.fa.s375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold375
Parameters: 2 7 7 80 10 50 1000
Length:  465583

Tables:   1   2   3   

This is table  1  of  3  ( 275 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1049--1104	27	2.0	28	82	3	69	16	5	23	55	1.61
5155--5184	2	15.0	2	100	0	60	50	0	0	50	1.00
7711--7748	2	19.0	2	100	0	76	50	0	0	50	1.00
8747--8772	2	13.0	2	100	0	52	50	0	0	50	1.00
13624--13653	15	1.9	16	93	6	53	76	3	13	6	1.11
16743--16785	2	21.5	2	95	0	77	48	2	0	48	1.14
19345--19397	18	3.2	18	70	24	53	60	0	1	37	1.08
22323--22393	27	2.6	27	88	6	99	46	23	7	22	1.76
24277--24322	21	2.1	22	84	4	58	19	30	19	30	1.97
26911--26979	28	2.5	28	88	2	104	47	20	5	26	1.72
35492--35523	6	5.3	6	96	0	55	28	0	15	56	1.40
37195--37242	3	16.0	3	100	0	96	33	0	0	66	0.92
38392--38435	20	2.2	20	88	4	63	47	6	11	34	1.66
38401--38442	20	2.1	20	86	0	57	50	9	7	33	1.62
44324--44368	22	2.1	21	87	4	63	44	15	2	37	1.59
45290--45324	2	17.5	2	100	0	70	48	0	0	51	1.00
47309--47375	32	2.1	32	97	0	125	49	13	10	26	1.74
49155--49179	2	12.5	2	100	0	50	48	0	0	52	1.00
51505--51548	17	2.7	16	82	10	54	4	18	0	77	0.94
54350--54383	2	17.0	2	93	0	59	47	0	0	52	1.00
54654--54728	36	2.0	38	92	7	127	13	32	17	37	1.88
54885--54965	28	2.9	27	80	12	92	23	6	23	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59457--59537	28	2.9	27	80	12	92	23	6	23	46	1.74
61827--62045	34	6.5	34	82	6	266	40	26	7	26	1.83
61827--62045	68	3.2	68	86	0	305	40	26	7	26	1.83
61825--62045	102	2.2	101	89	0	343	40	26	7	25	1.82
66111--66154	19	2.3	19	92	0	70	36	20	15	27	1.93
66461--66677	34	6.4	34	82	4	260	40	26	7	25	1.83
66461--66677	68	3.2	68	84	0	292	40	26	7	25	1.83
66462--66661	102	2.0	102	92	0	337	40	25	8	26	1.84
69134--69162	14	2.1	14	93	6	51	62	0	10	27	1.28
72798--72833	13	2.8	14	80	20	51	0	19	0	80	0.71
75007--75048	12	3.7	11	78	15	50	71	0	2	26	0.98
77892--77946	28	2.0	28	100	0	110	18	10	21	49	1.78
77928--77996	24	2.8	24	82	4	75	21	5	26	46	1.74
80501--80546	21	2.1	22	88	4	67	32	19	28	19	1.96
82450--82504	28	2.0	28	100	0	110	18	10	21	49	1.78
82486--82554	24	2.8	24	82	4	75	21	5	26	46	1.74
82874--82935	24	2.5	25	80	12	74	38	0	3	58	1.15
82908--82988	39	2.0	40	81	11	96	43	1	0	55	1.07
84593--84632	21	1.9	21	90	10	64	50	0	0	50	1.00
85938--85983	24	1.9	24	90	0	74	43	26	6	23	1.78
85952--86040	28	3.2	29	85	9	105	51	22	5	20	1.68
85988--86042	28	2.0	28	100	0	110	49	21	10	18	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90441--90486	20	2.3	20	84	0	56	32	4	47	15	1.65
90533--90578	24	1.9	24	90	0	74	43	26	6	23	1.78
90547--90635	28	3.2	29	85	9	105	51	22	5	20	1.68
90583--90637	28	2.0	28	100	0	110	49	21	10	18	1.78
91157--91189	17	1.9	17	88	11	50	3	21	0	75	0.93
91881--92147	29	9.3	29	74	6	175	37	20	4	37	1.74
91881--92069	86	2.2	86	80	3	211	37	21	3	38	1.71
91881--92147	57	4.6	58	76	3	216	37	20	4	37	1.74
93552--93586	5	7.0	5	93	0	61	77	0	0	22	0.78
93552--93627	15	4.9	15	76	13	73	68	1	2	27	1.11
93570--93622	22	2.5	22	75	9	56	67	0	3	28	1.07
93758--94307	166	3.3	167	80	6	541	49	7	10	32	1.66
95946--95998	21	2.7	20	80	8	63	43	0	0	56	0.99
97574--97648	27	2.8	27	83	0	105	48	21	6	24	1.74
102133--102205	27	2.7	27	85	4	94	45	23	6	24	1.77
103367--103401	2	17.5	2	93	0	61	48	0	0	51	1.00
103879--103911	16	2.1	16	94	0	57	30	0	12	57	1.35
106771--106814	2	22.0	2	100	0	88	50	0	0	50	1.00
108407--108431	2	12.5	2	100	0	50	48	0	0	52	1.00
121053--121082	15	1.9	16	93	6	53	76	3	13	6	1.11
123451--123501	15	3.4	15	76	23	54	58	5	0	35	1.22
124757--124797	15	2.8	15	79	13	50	58	7	0	34	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125577--125610	18	1.9	18	88	5	52	35	2	8	52	1.47
125741--125784	20	2.2	20	84	8	54	0	18	2	79	0.83
126682--126734	15	3.2	16	73	19	54	71	3	18	5	1.21
127027--127061	6	5.8	6	86	0	52	54	0	14	31	1.40
130776--130851	20	3.8	19	79	6	89	40	11	13	34	1.81
130773--130851	40	2.0	39	90	2	122	40	12	12	34	1.81
133124--133172	15	3.3	15	76	23	50	59	4	0	36	1.17
134635--134682	20	2.3	21	83	16	57	52	0	0	47	1.00
134596--134676	32	2.7	30	83	14	105	56	2	0	40	1.12
142011--142039	2	14.5	2	100	0	58	51	0	0	48	1.00
143690--143715	12	2.2	12	100	0	52	57	0	0	42	0.98
146027--146071	21	2.2	21	88	11	67	24	17	0	57	1.40
150063--150119	26	2.1	27	84	9	73	56	7	0	36	1.27
151017--151064	21	2.3	21	83	13	64	41	0	4	54	1.20
151149--151186	19	2.0	19	85	10	51	55	2	0	42	1.14
152993--153105	38	2.9	39	97	2	212	48	7	2	40	1.46
153612--153643	11	2.8	12	86	13	50	71	0	0	28	0.86
153921--153961	14	2.8	15	85	3	57	0	24	0	75	0.80
154421--154486	14	4.4	15	76	16	66	0	19	0	80	0.72
154420--154487	30	2.2	31	85	12	88	0	19	0	80	0.70
153540--154995	509	2.9	511	83	8	1744	46	10	7	36	1.65
154880--154933	19	2.7	19	86	13	65	66	5	1	25	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154947--155011	4	16.8	4	79	6	71	1	20	0	78	0.83
154936--155014	22	3.6	22	75	17	85	1	20	0	78	0.82
156514--156570	21	2.8	21	89	2	89	36	15	15	31	1.90
157334--157375	21	2.0	22	95	4	77	33	28	0	38	1.58
163847--163871	3	8.3	3	100	0	50	32	32	0	36	1.58
165456--165512	21	2.8	21	89	2	89	36	15	15	31	1.90
165570--165633	32	2.0	33	87	9	96	37	17	15	29	1.91
169515--169651	72	1.9	72	95	0	247	27	25	21	25	1.99
171538--171577	17	2.5	16	80	11	55	40	0	2	57	1.12
172208--172251	14	3.0	14	83	6	52	61	0	0	38	0.96
172207--172248	21	1.9	23	85	9	61	66	0	0	33	0.92
177800--177870	27	2.6	27	88	6	99	22	7	23	46	1.76
177947--177992	20	2.3	20	88	0	65	10	50	4	34	1.57
178464--178536	30	2.5	29	77	14	71	50	0	1	47	1.09
178814--178893	21	3.1	26	67	23	62	42	0	1	56	1.07
180106--180170	25	2.5	26	78	14	80	44	1	3	50	1.26
180963--181015	27	2.0	27	96	0	97	35	11	7	45	1.69
183910--184026	40	2.7	43	87	10	177	41	17	19	22	1.91
186801--186831	7	4.4	7	91	0	53	29	0	38	32	1.57
187443--187730	50	5.8	50	94	0	495	28	22	19	30	1.98
192117--192354	50	4.8	50	90	1	361	29	21	18	30	1.97
195534--195588	25	2.1	26	86	6	76	41	1	7	49	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195544--195603	25	2.4	25	80	2	59	53	1	10	35	1.44
196686--196749	32	2.0	32	90	6	103	40	14	6	39	1.71
201731--201785	11	5.0	11	72	16	51	40	1	7	50	1.40
202627--202685	28	2.1	28	87	3	82	16	1	3	77	0.98
202615--202686	36	2.0	36	91	5	119	19	1	2	76	0.99
202613--202688	18	4.3	17	77	9	80	19	1	2	76	0.98
205773--205809	18	2.0	20	89	10	60	13	10	10	64	1.49
206621--206653	2	16.5	2	100	0	66	51	0	0	48	1.00
208295--208331	2	18.5	2	100	0	74	48	0	0	51	1.00
209136--209171	14	2.7	13	87	8	54	77	2	2	16	1.00

Tables:   1   2   3