genome.fa.s375.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold375
Parameters: 2 7 7 80 10 50 1000
Length:  465583

Tables:   1   2   3   

This is table  2  of  3  ( 275 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211539--211583	3	15.0	3	100	0	90	33	0	0	66	0.92
212753--212794	20	2.1	20	86	0	57	50	9	7	33	1.62
216614--216640	2	13.5	2	100	0	54	51	0	0	48	1.00
219725--219749	2	12.5	2	100	0	50	52	0	0	48	1.00
221152--221201	24	2.1	24	82	14	59	38	2	2	58	1.21
222174--222240	32	2.1	32	100	0	134	47	13	11	26	1.77
225650--225866	34	6.4	34	89	0	310	25	7	26	40	1.82
225650--225868	102	2.2	101	90	3	350	25	7	26	40	1.81
226175--226235	19	3.2	19	88	0	86	31	18	14	36	1.91
230298--230520	34	6.6	34	88	0	313	25	7	27	39	1.82
230298--230518	102	2.2	101	91	3	363	25	7	27	40	1.82
230947--230990	17	2.7	16	82	10	54	4	18	0	77	0.94
232442--232656	93	2.3	92	79	10	238	39	9	15	35	1.80
234101--234172	36	2.0	36	97	0	135	16	31	13	37	1.88
235222--235292	28	2.6	28	88	2	108	23	5	22	47	1.72
235222--235313	28	3.4	27	82	5	107	25	6	21	46	1.75
239795--239886	28	3.4	27	81	8	100	25	7	21	45	1.78
240729--240759	2	15.5	2	93	0	53	51	0	45	3	1.17
248309--248365	26	2.2	26	87	3	80	36	7	7	49	1.57
249505--249540	12	3.2	12	84	15	58	66	0	0	33	0.92
249509--249556	22	2.2	22	81	7	53	72	2	6	18	1.15
251989--252036	17	2.7	18	77	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255190--255456	29	9.3	28	71	5	158	37	22	2	36	1.70
255301--255460	57	2.8	57	79	0	158	40	21	2	35	1.67
256863--256892	5	6.0	5	100	0	60	80	0	0	20	0.72
257065--257603	166	3.3	160	77	10	491	51	8	9	31	1.64
263254--263318	27	2.4	27	100	0	130	47	24	7	20	1.76
269236--269267	13	2.5	13	94	0	55	12	9	3	75	1.16
269937--269981	23	2.0	23	100	0	90	35	13	17	33	1.89
271571--271613	17	2.6	17	81	3	52	69	0	0	30	0.88
271641--271671	7	4.4	7	100	0	62	29	32	25	12	1.93
275315--275366	27	1.9	27	84	7	70	26	23	9	40	1.85
277251--277295	2	22.5	2	95	0	81	48	0	0	51	1.00
281403--281433	2	15.5	2	100	0	62	48	0	0	51	1.00
282923--282949	2	13.5	2	100	0	54	48	0	0	51	1.00
283924--283951	2	14.0	2	100	0	56	50	0	0	50	1.00
284872--284940	36	1.9	36	81	0	84	50	2	2	43	1.32
290636--290660	2	12.5	2	100	0	50	52	0	0	48	1.00
295314--295343	15	1.9	16	93	6	53	76	3	13	6	1.11
297706--297756	15	3.4	15	76	23	54	58	5	0	35	1.22
298521--298554	18	1.9	18	94	5	61	38	2	5	52	1.41
299983--300016	18	1.9	18	88	5	52	35	2	8	52	1.47
300147--300179	14	2.4	14	90	10	50	0	15	0	84	0.61
300149--300182	12	2.9	11	87	12	50	0	14	0	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302259--302304	24	1.9	24	82	8	58	41	6	0	52	1.27
302671--302703	15	2.2	16	89	10	52	66	6	6	21	1.35
304198--304235	2	19.0	2	100	0	76	50	0	0	50	1.00
305584--305616	17	1.9	17	100	0	66	57	0	0	42	0.98
305629--305664	11	3.5	11	85	14	58	66	0	0	33	0.92
305508--305665	17	8.8	17	66	23	65	56	1	2	39	1.24
306055--306112	24	2.3	26	88	5	84	32	24	15	27	1.95
306218--306263	20	2.3	20	88	0	65	10	45	4	39	1.59
308746--308791	21	2.1	22	84	4	58	30	19	30	19	1.97
310655--310712	24	2.3	26	91	5	93	32	25	15	25	1.95
310817--310862	20	2.3	20	84	0	56	10	47	4	36	1.58
312939--313087	69	2.1	70	85	1	201	44	9	16	29	1.78
312939--313121	70	2.6	69	84	2	206	42	10	16	30	1.82
313998--314030	9	3.8	9	92	4	50	75	0	0	24	0.80
313996--314034	15	2.5	16	87	8	62	74	0	0	25	0.82
313996--314055	23	2.6	22	77	12	59	70	1	0	28	0.97
319264--319305	9	4.8	9	94	2	68	76	0	0	23	0.79
319262--319307	15	3.0	15	87	9	58	76	0	0	23	0.79
319269--319316	3	16.7	3	78	8	55	72	0	0	27	0.84
319655--319711	28	2.0	28	89	0	87	56	7	1	35	1.37
322039--322117	17	4.8	16	84	6	86	37	10	11	40	1.75
325688--325819	62	2.1	62	77	2	140	25	9	38	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325593--325903	140	2.2	140	91	1	491	27	10	36	25	1.89
326540--326580	18	2.4	17	84	8	55	41	2	9	46	1.50
330473--330558	29	3.0	28	79	6	93	59	3	6	30	1.41
330473--330546	30	2.5	30	82	6	89	55	4	6	33	1.45
333237--333275	19	2.1	19	90	0	60	35	2	10	51	1.50
334483--334528	20	2.2	20	84	3	56	32	0	4	63	1.14
334916--334956	2	19.5	2	85	9	55	51	2	2	43	1.28
338281--338329	20	2.5	20	86	0	71	38	4	46	10	1.57
338372--338422	25	2.0	25	81	7	59	47	17	7	27	1.75
338397--338477	28	2.9	27	82	12	101	46	23	7	22	1.76
340359--340404	21	2.1	22	88	4	67	19	28	19	32	1.96
342847--342895	20	2.5	20	86	0	71	38	4	46	10	1.57
342938--342988	25	2.0	25	81	7	59	47	17	7	27	1.75
343243--343465	110	2.0	110	99	0	437	32	10	24	33	1.89
346801--346853	27	2.1	26	82	10	65	60	5	0	33	1.20
346847--346900	19	2.6	22	78	21	64	55	1	0	42	1.10
348669--348749	22	3.6	22	75	14	60	55	4	1	38	1.29
348697--348751	23	2.5	22	80	13	60	56	3	1	38	1.28
349079--349115	19	2.0	18	89	5	56	27	2	0	70	1.01
349080--349127	19	2.5	19	83	6	53	31	2	0	66	1.03
349541--349828	50	5.8	50	94	0	495	28	22	19	30	1.98
358224--358277	11	5.0	11	76	13	58	40	1	7	50	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359175--359245	17	3.9	18	76	10	72	25	0	2	71	0.99
359162--359242	16	5.0	16	67	24	53	27	0	3	69	1.05
359178--359264	44	2.0	44	82	11	106	27	1	3	67	1.13
362321--362357	18	2.0	20	89	10	60	13	10	10	64	1.49
363604--363657	23	2.4	22	81	12	56	29	3	7	59	1.42
364813--364859	2	23.5	2	100	0	94	48	0	0	51	1.00
366589--366618	2	15.0	2	100	0	60	50	0	0	50	1.00
367014--367043	3	10.0	3	100	0	60	33	0	0	66	0.92
367611--367636	2	13.0	2	100	0	52	50	0	0	50	1.00
367770--367831	29	2.1	29	82	5	72	29	9	8	53	1.62
368862--368927	32	2.1	31	83	11	80	46	1	0	51	1.10
373965--374029	30	2.2	28	81	15	69	41	13	1	43	1.54
374237--374438	94	2.1	94	99	0	395	28	14	21	35	1.93
377164--377230	32	2.1	32	97	0	125	49	13	11	25	1.76
382827--383004	93	1.9	95	83	4	236	40	6	14	39	1.70
382812--383025	93	2.3	93	76	11	229	38	9	15	36	1.80
384172--384201	2	15.0	2	92	0	51	46	0	0	53	1.00
384661--384703	22	1.9	23	85	4	61	46	11	2	39	1.53
385052--385661	96	6.4	95	82	5	658	42	6	12	37	1.70
385052--385678	191	3.3	188	84	7	789	42	7	12	37	1.71
390341--390402	26	2.4	24	77	15	61	66	0	1	32	1.02
390434--390469	12	3.2	12	84	15	58	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390438--390485	22	2.2	22	81	7	53	72	2	6	18	1.15
394120--394976	95	9.0	94	80	7	816	39	6	14	38	1.73
394125--394971	287	3.0	282	82	4	1004	40	6	14	38	1.73
397721--397789	27	2.6	27	79	11	79	7	15	0	76	0.99
397747--397781	17	2.1	17	88	0	52	0	17	0	82	0.66
397752--397786	17	2.1	17	88	0	52	2	14	0	82	0.77
397741--397788	19	2.6	17	80	12	51	4	14	0	81	0.84
397721--397789	14	5.1	13	76	13	59	7	15	0	76	0.99
399864--399925	26	2.4	24	77	15	61	66	0	1	32	1.02
399956--399991	12	3.2	12	84	15	58	66	0	0	33	0.92

Tables:   1   2   3