Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold375
Parameters: 2 7 7 80 10 50 1000
Length:  465583

Tables:   1   2   3   

This is table  3  of  3  ( 275 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
399960--400007
22
2.2
22
81
7
53
72
2
6
18
1.15
402873--402926
20
2.8
19
75
10
56
48
0
0
51
1.00
402872--402924
17
2.9
17
75
24
54
49
0
0
50
1.00
402853--402961
38
2.9
37
76
12
100
40
1
0
56
1.16
406843--407109
29
9.3
28
75
4
187
37
21
4
35
1.75
406843--407031
86
2.2
86
81
3
220
37
22
3
36
1.71
406843--407113
57
4.7
57
76
5
181
38
21
4
35
1.75
408543--408578
5
7.2
5
90
0
54
75
0
5
19
1.00
408565--408606
17
2.5
17
80
3
50
69
0
4
26
1.08
408744--409056
164
1.9
164
82
3
389
50
8
9
30
1.66
408925--409208
152
1.9
151
83
5
338
50
9
10
29
1.68
410918--410956
21
1.9
19
85
10
51
38
0
2
58
1.12
412407--412494
38
2.3
38
98
0
167
28
7
20
43
1.80
418042--418074
15
2.1
16
88
5
50
0
18
0
81
0.68
419330--420054
32
24.0
31
83
5
472
21
18
29
29
1.97
419418--420058
241
2.7
240
90
3
960
21
18
30
29
1.97
419415--420058
32
21.5
30
86
6
536
21
18
30
29
1.97
420066--420585
28
18.9
28
89
2
770
28
14
33
24
1.94
420066--420585
55
9.5
55
91
1
794
28
14
33
24
1.94
427999--428033
2
17.5
2
93
0
61
51
2
0
45
1.16
428400--428432
11
2.8
12
90
9
50
0
15
0
84
0.61
428402--428435
16
2.1
16
88
0
50
0
17
0
82
0.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
428403--428457
24
2.5
21
78
16
58
1
21
0
76
0.88
429512--429550
19
2.1
19
85
0
51
38
2
2
56
1.27
430619--430662
20
2.2
20
80
4
54
40
4
38
15
1.68
430759--430829
27
2.6
27
86
6
99
46
22
7
23
1.76
432713--432758
21
2.1
22
84
4
58
19
30
19
30
1.97
435349--435444
27
3.5
27
92
4
149
46
23
6
22
1.74
436512--436571
26
2.3
27
91
2
95
46
20
3
30
1.66
438810--438841
13
2.5
13
94
0
55
12
9
3
75
1.16
444868--444919
27
1.9
27
84
7
70
26
21
9
42
1.83
449495--449528
2
17.0
2
100
0
68
50
0
0
50
1.00
451119--451143
2
12.5
2
100
0
50
48
0
0
52
1.00
454420--454465
21
2.1
22
84
4
58
19
30
19
30
1.97
459180--459209
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1   2   3

The End!