genome.fa.s378.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold378
Parameters: 2 7 7 80 10 50 1000
Length:  305097

Tables:   1   2   3   

This is table  3  of  3  ( 305 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221886--221947	11	5.8	11	73	17	51	67	0	3	29	1.06
226669--226703	3	11.7	3	100	0	70	65	0	0	34	0.93
227617--227643	14	1.9	14	100	0	54	7	0	40	51	1.30
228161--228252	44	2.1	44	97	0	175	41	22	21	14	1.89
231049--231166	57	1.9	57	81	11	137	34	2	0	61	1.15
231097--231137	21	2.0	21	85	9	57	31	4	0	63	1.15
231104--231177	36	2.1	36	82	10	89	36	2	0	60	1.11
232369--232439	20	3.7	20	76	14	60	39	0	1	59	1.06
243427--243457	16	2.0	16	93	6	55	38	22	12	25	1.90
247143--247193	23	2.2	23	79	6	59	47	0	0	52	1.00
247152--247201	23	2.4	22	81	15	61	46	0	0	54	1.00
247253--247293	20	2.2	20	82	8	50	46	0	0	53	1.00
247295--247346	21	2.5	20	87	9	68	36	0	0	63	0.95
247303--247388	36	2.3	36	82	13	104	36	1	0	62	1.03
247290--247359	20	3.4	21	69	16	56	40	0	0	60	0.97
247297--247387	18	4.8	19	74	18	68	36	1	0	62	1.02
247332--247387	17	3.2	16	73	26	51	35	1	0	62	1.06
247273--247381	56	2.0	55	85	12	152	37	0	0	61	1.02
247773--247802	15	1.9	16	93	6	53	56	0	0	43	0.99
247791--247859	31	2.2	32	92	7	115	50	0	0	49	1.00
247790--247872	31	2.8	31	76	18	95	49	0	0	50	1.00
250286--250312	12	2.2	12	100	0	54	37	0	14	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251170--251244	21	3.7	19	70	10	60	49	2	0	48	1.15
252195--252236	23	1.9	21	90	9	66	52	0	0	47	1.00
253318--253369	18	2.8	18	79	2	59	59	0	0	40	0.97
256440--256473	15	2.2	16	89	5	52	44	0	0	55	0.99
256656--256723	17	4.1	15	80	17	73	42	2	1	52	1.25
256680--256728	17	2.9	17	75	24	59	40	2	0	57	1.10
256886--256926	3	13.7	3	100	0	82	65	0	0	34	0.93
256880--256925	15	3.1	15	93	3	67	69	0	0	30	0.89
257917--257961	23	2.0	23	86	8	65	44	0	2	53	1.13
257960--258020	27	2.3	27	88	5	88	42	1	0	55	1.09
266611--266652	2	21.0	2	85	0	57	50	7	0	42	1.30
267249--267340	46	1.9	49	85	12	129	46	3	5	44	1.42
267485--267520	16	2.1	17	90	10	56	38	2	0	58	1.13
279497--279554	13	4.0	13	74	23	53	32	17	15	34	1.91
279511--279571	19	3.5	19	75	25	80	34	18	13	34	1.89
279498--279571	32	2.3	32	97	0	139	33	17	14	33	1.91
280613--280697	28	2.8	30	79	15	95	18	18	29	32	1.95
280650--280948	57	5.2	56	84	8	372	20	16	30	32	1.95
280650--280948	29	10.4	29	80	11	332	20	16	30	32	1.95
280650--280948	86	3.5	86	88	6	430	20	16	30	32	1.95
282331--282392	4	15.8	4	85	9	65	0	3	14	82	0.80
282321--282395	11	6.5	11	77	11	71	0	2	14	82	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282320--282401	39	2.2	37	84	4	110	0	2	14	82	0.76
282320--282401	12	6.8	12	78	13	80	0	2	14	82	0.76
296258--296285	13	2.2	13	100	0	56	39	17	14	28	1.89
296337--296397	19	3.5	19	70	25	62	36	16	11	36	1.85
296324--296401	32	2.4	32	91	0	129	35	16	11	35	1.85
296356--296380	13	1.9	13	100	0	50	32	16	16	36	1.90
298162--298203	15	2.8	16	89	10	70	85	4	0	9	0.72
299704--299755	23	2.3	22	80	9	61	73	9	13	3	1.23
299706--299749	24	1.9	22	86	9	61	72	6	15	4	1.22
301088--302952	139	13.3	137	75	8	947	29	28	18	23	1.98
301002--303201	28	77.5	28	75	9	1093	29	28	18	24	1.98
302327--302400	27	2.7	27	85	2	94	31	32	17	18	1.95
303025--303240	32	6.7	32	78	7	179	27	26	17	27	1.98
303022--303214	65	3.0	65	78	4	214	27	26	18	26	1.98
303026--303240	33	6.7	32	76	13	158	27	26	17	27	1.98
303395--303535	52	2.7	52	80	4	149	26	26	12	34	1.92
303827--303865	15	2.4	16	91	8	62	84	5	0	10	0.76
304111--304146	18	1.9	18	88	5	54	83	0	0	16	0.65
304678--304729	3	17.0	3	81	18	63	69	0	28	1	0.99
304678--304746	13	6.0	11	82	16	61	75	0	23	1	0.89
304678--304730	16	3.4	16	80	15	67	69	0	28	1	0.99

Tables:   1   2   3

The End!