genome.fa.s379.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold379
Parameters: 2 7 7 80 10 50 1000
Length:  429249

Tables:   1   2   3   

This is table  3  of  3  ( 277 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376679--376722	20	2.1	22	87	8	65	34	4	20	40	1.73
384616--384641	9	2.9	9	100	0	52	34	0	7	57	1.27
389801--389926	52	2.4	52	95	0	225	26	20	17	34	1.95
389935--389959	13	1.9	13	100	0	50	36	16	16	32	1.90
390001--390066	19	3.8	19	77	22	90	36	18	12	33	1.88
390022--390046	13	1.9	13	100	0	50	32	16	16	36	1.90
390003--390065	32	2.0	32	100	0	126	34	19	12	33	1.89
390716--390942	55	4.3	55	69	12	188	33	15	26	23	1.95
390708--391002	154	1.9	154	95	0	527	33	15	27	23	1.95
391007--391288	49	5.8	48	76	10	191	29	17	26	26	1.97
391300--391376	28	2.6	29	76	13	70	18	16	27	37	1.92
391397--391548	34	4.3	34	73	13	121	38	10	29	21	1.87
391523--391606	28	2.9	29	78	3	89	21	16	33	28	1.95
393039--393075	16	2.3	16	90	0	56	0	0	13	86	0.57
397229--397316	44	2.0	44	93	0	149	40	23	23	11	1.87
397919--397955	2	18.5	2	100	0	74	48	0	0	51	1.00
398589--398616	13	2.2	13	100	0	56	60	0	0	39	0.97
403951--403986	2	18.0	2	100	0	72	50	0	0	50	1.00
404741--404765	13	1.9	13	100	0	50	36	16	16	32	1.90
404837--404861	13	1.9	13	100	0	50	32	16	16	36	1.90
404870--404998	52	2.5	52	92	0	213	36	17	17	27	1.93
408691--408734	21	2.1	21	95	0	79	40	4	31	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409355--409397	20	2.2	20	100	0	86	30	20	13	34	1.92
413264--413332	32	2.1	34	86	5	97	73	0	21	4	1.00
413271--413328	15	3.7	15	72	17	55	72	0	24	3	1.00
415121--415153	16	2.1	16	100	0	66	39	12	12	36	1.80
417127--417185	32	1.9	30	83	13	75	59	10	10	20	1.58
417504--417559	21	2.7	21	80	2	69	32	19	12	35	1.89
420008--420045	13	2.9	13	96	0	67	31	15	18	34	1.92
422126--422155	15	2.0	15	93	0	51	13	23	13	50	1.77
423960--424004	21	2.1	21	84	8	56	22	20	4	53	1.63
425885--425943	32	1.9	30	83	13	75	59	10	10	20	1.58
427332--427376	21	2.1	21	84	12	56	37	37	4	20	1.73
427333--427444	34	3.3	34	91	2	163	40	37	1	20	1.63
427367--427424	12	5.0	12	74	16	50	41	41	0	17	1.49
427412--427466	22	2.6	21	91	2	83	40	36	1	21	1.64
427347--427446	34	3.0	34	94	1	166	40	39	1	20	1.59

Tables:   1   2   3

The End!