genome.fa.s388.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold388
Parameters: 2 7 7 80 10 50 1000
Length:  417701

Tables:   1   2   3   

This is table  3  of  3  ( 295 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374121--374556	67	6.7	65	73	18	295	20	33	13	32	1.91
374121--374570	33	13.8	33	75	18	340	20	33	13	32	1.91
374143--374565	100	4.3	100	88	5	542	19	33	13	33	1.91
374572--374739	32	5.2	33	89	5	256	27	35	17	18	1.94
374578--374746	63	2.7	64	89	3	254	28	35	18	17	1.93
374739--375624	49	18.7	49	80	10	929	25	25	17	31	1.97
374734--375580	92	9.1	92	84	9	921	25	26	17	31	1.97
375296--375692	52	7.9	51	81	9	431	23	25	17	33	1.96
375296--375692	101	3.9	101	86	7	538	23	25	17	33	1.96
375439--375624	95	2.0	95	92	2	311	24	23	18	33	1.97
376574--376630	13	3.9	13	76	24	60	35	14	17	33	1.90
376554--376651	32	3.0	32	96	1	178	34	12	17	35	1.87
376552--376649	19	5.8	18	71	28	90	33	12	17	36	1.87
376692--376716	13	1.9	13	100	0	50	32	16	16	36	1.90
376705--376853	52	2.9	50	89	6	217	33	18	16	30	1.94
380074--380111	20	2.0	20	94	5	69	36	15	10	36	1.82
380167--380191	13	1.9	13	100	0	50	32	16	16	36	1.90
380147--380210	33	2.0	32	90	3	101	32	20	14	32	1.92
380279--380306	13	2.2	13	100	0	56	42	14	14	28	1.84
380261--380325	32	2.0	33	87	3	96	43	12	15	29	1.83
380852--380909	31	1.9	31	85	3	82	36	18	12	32	1.88
382774--382798	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388887--388923	19	1.9	19	94	0	65	37	13	10	37	1.80
390030--390819	89	8.9	89	85	1	981	28	27	14	28	1.95
390031--390795	357	2.2	356	85	2	1045	28	27	14	28	1.95
391225--391323	42	2.4	41	78	11	103	20	22	15	42	1.89
391346--392809	42	35.1	42	69	9	257	17	29	16	36	1.92
391342--391574	126	1.8	126	81	3	290	18	32	16	33	1.93
391356--392814	84	17.5	85	69	11	465	17	29	16	36	1.92
393268--393295	13	2.2	13	100	0	56	28	14	17	39	1.89
393248--393313	33	2.0	33	88	5	98	30	15	13	40	1.85
408371--408462	37	2.5	37	94	3	161	25	16	15	43	1.86
408820--409571	29	26.4	29	83	5	838	32	26	17	23	1.96
408814--409571	85	8.9	85	86	5	819	32	27	17	23	1.96
408820--409571	57	13.2	57	82	6	778	32	26	17	23	1.96
409593--409728	43	3.0	43	79	12	182	25	25	16	31	1.97
409588--409880	52	6.0	49	77	9	278	27	25	14	32	1.95
409633--409880	101	2.5	101	82	2	284	27	25	14	32	1.94
414128--414850	42	17.5	42	73	8	376	17	28	15	37	1.91
414156--416163	84	24.2	83	68	12	438	19	28	15	37	1.92
414128--414810	331	2.1	333	82	4	817	18	28	15	37	1.91
414741--414888	39	3.7	38	77	8	125	16	33	15	34	1.91
414741--414888	78	1.9	81	81	9	189	16	33	15	34	1.91
414551--414896	120	2.8	121	81	7	369	16	29	16	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414702--414931	120	1.9	119	80	7	270	16	30	17	35	1.92
415636--416163	42	12.9	40	69	15	251	20	30	14	35	1.92
415634--416156	126	4.2	125	75	14	346	19	30	13	35	1.91
415869--416155	82	3.5	86	79	9	269	18	31	14	34	1.92
415843--416226	120	3.1	124	78	9	324	19	32	14	34	1.92
415939--416184	39	6.1	39	73	14	135	18	33	13	34	1.90
416175--416267	42	2.2	42	84	7	118	19	34	15	31	1.92
416474--416682	42	5.0	42	75	7	192	14	27	17	40	1.89
416474--416830	126	2.8	126	76	7	289	16	27	16	38	1.91
416474--416706	84	2.8	84	80	2	261	16	26	18	39	1.91
416746--416863	41	2.9	41	80	1	119	16	34	12	36	1.86

Tables:   1   2   3

The End!