genome.fa.s391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold391
Parameters: 2 7 7 80 10 50 1000
Length:  290649

Tables:   1   2   3   

This is table  1  of  3  ( 292 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1179--1227	15	3.3	15	80	5	64	67	2	0	30	1.02
1182--1227	14	3.2	14	78	6	56	69	2	0	28	1.00
1183--1230	21	2.3	21	85	7	62	64	2	0	33	1.05
1386--1477	8	12.0	8	68	21	63	41	0	0	58	0.98
1390--1426	12	3.2	12	88	3	58	40	0	0	59	0.97
1397--1476	17	4.6	17	77	14	83	42	0	0	57	0.98
3307--3340	15	2.3	15	85	5	52	82	0	14	2	0.79
5168--5203	18	2.0	18	88	0	54	33	0	0	66	0.92
9132--9173	13	3.1	13	86	6	57	64	0	2	33	1.07
21624--21660	19	2.1	19	85	14	53	59	0	0	40	0.97
23079--23135	4	13.8	4	80	7	51	78	0	19	1	0.83
23077--23147	17	4.3	16	81	10	81	81	0	16	1	0.76
23076--23147	18	3.9	18	79	13	83	80	0	18	1	0.78
23076--23147	12	5.8	12	74	9	56	80	0	18	1	0.78
23165--23202	18	2.1	18	85	9	51	39	0	0	60	0.97
23226--23273	18	2.7	18	75	12	55	33	0	4	62	1.14
23499--23554	22	2.5	22	80	5	60	23	1	5	69	1.18
23521--23556	19	2.0	19	89	10	58	19	2	5	72	1.17
23983--24067	37	2.3	36	80	15	86	35	1	1	62	1.11
26726--26750	13	1.9	13	100	0	50	0	8	0	92	0.40
27324--27371	2	24.5	2	91	4	80	47	0	2	50	1.12
28025--28079	19	2.8	20	78	10	60	60	1	0	38	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29338--29385	22	2.2	22	85	7	62	18	0	6	75	1.01
29644--29699	25	2.2	25	83	0	67	26	1	7	64	1.29
29959--30027	29	2.5	27	81	9	77	42	1	1	55	1.18
29984--30053	20	3.3	21	86	9	90	44	0	0	55	0.99
30118--30248	44	3.0	45	88	2	185	28	19	9	41	1.83
33930--33963	12	2.8	13	82	17	54	41	0	0	58	0.98
36041--36110	35	2.0	35	100	0	140	51	14	17	17	1.77
41806--41851	17	2.7	18	83	6	60	63	0	0	36	0.95
41806--41866	17	3.6	16	80	4	50	59	0	1	39	1.08
42000--42032	17	1.9	17	93	0	57	81	0	3	15	0.80
46779--46850	35	2.1	35	100	0	144	45	0	11	43	1.39
47950--47990	21	2.0	21	85	9	57	41	0	7	51	1.30
48033--48065	2	16.5	2	100	0	66	48	0	0	51	1.00
48821--48866	24	1.9	24	82	8	58	50	2	4	43	1.34
52361--52416	26	2.2	26	100	0	112	46	3	8	41	1.52
52455--52512	22	2.6	22	81	8	55	37	5	0	56	1.21
52731--52769	19	2.0	20	85	14	55	61	7	0	30	1.24
54217--54253	2	18.5	2	100	0	74	51	0	0	48	1.00
55095--55170	37	2.1	37	97	0	143	26	17	15	40	1.89
55991--56457	6	77.8	6	82	2	265	39	13	35	11	1.81
56015--56448	24	17.8	24	80	4	332	40	13	35	11	1.80
56913--56959	22	2.1	21	88	7	67	51	2	2	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56919--56981	30	2.1	31	84	3	83	52	3	1	42	1.27
66414--66452	1	39.0	1	84	0	51	2	92	5	0	0.46
66648--66678	2	15.5	2	93	0	53	54	0	0	45	0.99
68407--68467	23	2.8	20	75	20	59	50	1	0	47	1.10
68470--68516	22	2.0	24	84	8	62	51	0	6	42	1.27
68966--69018	19	3.1	17	89	8	72	67	1	3	26	1.17
68992--69029	8	4.8	8	84	12	51	73	0	0	26	0.83
68984--69022	16	2.4	16	91	8	62	74	0	2	23	0.94
69925--69962	17	2.2	18	90	4	60	44	0	5	50	1.24
70455--70535	27	3.1	28	74	15	77	51	1	0	46	1.08
70455--70563	46	2.3	46	76	6	112	53	0	1	44	1.17
70965--71034	27	2.7	26	74	10	70	32	0	0	67	0.91
71016--71069	29	2.0	28	82	10	67	46	0	0	53	1.00
70990--71062	17	4.1	18	73	13	62	42	0	0	57	0.98
71567--71628	28	2.1	29	82	5	72	53	0	1	45	1.10
71814--71860	17	2.7	18	84	12	62	44	0	0	55	0.99
72116--72154	6	6.3	6	85	5	51	38	0	0	61	0.96
72115--72154	19	2.0	20	85	4	55	40	0	0	60	0.97
72149--72234	22	3.7	23	76	15	97	53	0	1	45	1.07
72105--72231	25	5.4	23	68	17	75	51	0	0	47	1.06
72374--72467	5	18.6	5	70	12	59	43	0	1	55	1.06
72375--72466	11	8.0	11	72	21	73	44	0	1	54	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72372--72435	21	3.0	21	88	2	83	39	0	1	59	1.07
72374--72467	16	5.5	16	69	20	66	43	0	1	55	1.06
72376--72427	27	2.0	26	81	11	61	36	0	1	61	1.07
72477--72514	16	2.3	17	81	4	51	34	0	0	65	0.93
73337--73472	72	1.9	73	84	1	184	43	9	8	38	1.69
76436--76477	16	2.7	15	85	3	57	40	0	4	54	1.21
76436--76477	15	2.7	15	82	17	50	40	0	4	54	1.21
78544--78575	3	10.7	3	93	0	55	65	0	0	34	0.93
79628--79656	2	14.5	2	100	0	58	51	0	0	48	1.00
80861--80913	23	2.4	22	79	17	56	64	3	3	28	1.28
81439--81471	17	2.0	17	94	5	59	30	0	3	66	1.06
89992--90043	16	3.4	15	76	21	54	48	0	0	51	1.00
89956--90050	27	3.4	28	77	19	90	47	0	0	52	1.00
89957--90048	32	3.2	28	77	17	98	48	0	0	51	1.00
89985--90085	20	5.6	18	69	23	61	41	0	0	57	1.05
90017--90113	31	3.0	31	79	11	97	38	1	0	60	1.03
90058--90116	15	3.9	15	76	12	66	42	0	0	57	0.98
90038--90086	20	2.3	23	86	10	68	32	2	0	65	1.04
90038--90098	25	2.5	24	82	10	72	34	1	0	63	1.04
90059--90104	11	4.4	11	74	20	53	41	0	0	58	0.98
90197--90240	17	2.5	18	82	13	56	59	0	0	40	0.98
90352--90411	20	3.0	21	75	4	61	63	1	0	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90328--90418	14	6.5	14	71	13	62	62	1	0	36	1.02
90340--90420	22	3.9	21	74	8	76	61	1	0	37	1.04
90821--90880	28	2.1	28	90	6	95	15	13	0	71	1.14
92018--92116	17	5.9	17	73	11	62	59	1	1	38	1.11
92010--92112	33	3.1	33	74	19	97	57	0	0	40	1.12
92321--92352	13	2.5	13	94	0	55	25	9	6	59	1.52
93390--93453	32	2.0	33	90	3	103	53	0	0	46	1.00
93396--93450	17	3.4	17	75	25	64	56	0	0	43	0.99
95499--95543	5	9.2	5	83	16	51	35	0	0	64	0.94
95505--95553	23	2.0	25	88	7	75	30	0	0	69	0.89
95497--95550	17	3.1	18	81	10	67	35	0	0	64	0.94
95677--95732	18	2.8	20	84	7	62	57	0	3	39	1.16
95703--95738	18	2.0	18	94	0	63	58	0	2	38	1.13
96198--96269	35	2.0	36	84	7	94	47	0	1	51	1.09
96585--96633	15	3.1	16	75	21	50	44	0	0	55	0.99
96532--96622	47	1.9	46	82	8	112	39	1	2	57	1.18
101210--101246	19	1.9	19	88	0	56	37	10	29	21	1.88
102237--102287	25	2.0	25	85	7	68	37	0	1	60	1.08
102279--102319	21	2.1	20	86	13	59	51	4	0	43	1.23
103479--103541	14	4.6	14	75	15	60	60	3	0	36	1.13
103700--103734	2	17.5	2	100	0	70	51	0	0	48	1.00
105843--105884	21	2.0	21	85	0	57	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106022--106059	18	2.1	19	95	5	69	50	0	0	50	1.00
106477--106568	37	2.4	38	84	8	118	41	4	0	54	1.20
106862--106891	16	1.9	15	93	6	51	56	3	0	40	1.16
107034--107105	32	2.2	33	85	2	101	55	1	0	43	1.08
107517--107547	13	2.3	14	94	5	55	38	0	0	61	0.96
107560--107651	32	3.0	32	78	12	95	44	0	0	55	0.99
107817--107938	30	3.9	31	69	21	85	47	1	0	50	1.10
108832--108878	22	2.1	23	88	4	69	42	0	6	51	1.27
110449--110487	20	2.0	20	85	10	53	35	0	2	61	1.10
110542--110617	23	3.3	23	79	3	73	61	1	0	36	1.04

Tables:   1   2   3