Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold391
Parameters: 2 7 7 80 10 50 1000
Length:  290649

Tables:   1   2   3   

This is table  3  of  3  ( 292 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
227369--227466
33
2.9
34
77
11
103
39
1
0
59
1.04
227649--227712
18
3.5
18
69
14
51
39
0
1
59
1.07
233399--233452
9
6.0
9
78
8
56
37
1
1
59
1.19
234322--234407
42
2.0
43
81
2
102
15
34
5
44
1.70
236465--236505
11
3.8
11
81
15
50
39
0
0
60
0.96
236466--236505
21
2.0
19
85
9
53
40
0
0
60
0.97
237053--237117
32
2.0
32
85
11
89
35
1
0
63
1.04
237065--237127
22
2.9
23
76
19
64
33
1
0
65
1.03
237512--237561
23
2.2
23
88
0
73
38
2
0
60
1.09
246414--246469
27
2.1
26
80
12
60
48
5
0
46
1.25
246566--246619
25
2.3
23
77
20
58
44
0
0
55
0.99
246569--246616
25
2.0
24
84
12
62
47
0
0
52
1.00
246661--246702
15
2.7
16
82
14
52
71
0
0
28
0.86
246805--246907
50
2.0
50
83
9
129
53
0
1
44
1.11
247136--247179
2
22.5
2
86
4
63
50
4
0
45
1.22
247566--247606
18
2.3
19
87
8
59
48
2
0
48
1.14
247750--247818
30
2.3
29
80
14
77
52
1
0
46
1.09
247767--247827
30
1.9
31
83
9
79
55
0
0
44
0.99
248653--248699
16
3.0
16
73
17
53
51
0
0
48
1.00
248661--248732
17
4.5
17
70
16
55
52
0
0
47
1.00
248655--248715
33
1.9
32
90
6
97
50
0
0
49
1.00
248990--249076
24
3.4
25
79
10
95
52
0
1
45
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
249056--249110
10
4.6
13
72
22
50
50
0
0
49
1.00
249062--249102
11
3.8
11
83
6
57
46
0
0
53
1.00
249058--249099
21
2.0
22
90
4
68
47
0
0
52
1.00
249044--249106
22
2.6
25
74
23
64
47
0
0
52
1.00
249208--249268
17
3.5
16
80
13
59
68
0
0
31
0.89
249719--249822
11
9.3
11
75
14
88
60
0
0
39
0.97
249893--249931
13
2.9
14
84
3
53
48
0
0
51
1.00
250016--250073
13
4.5
13
81
10
66
50
0
0
50
1.00
250041--250108
32
2.2
32
84
7
86
48
1
0
50
1.10
250029--250105
31
2.6
28
75
15
75
50
1
0
48
1.09
250291--250458
5
33.6
5
65
15
62
54
0
0
44
1.08
250301--250389
33
2.6
34
77
16
94
53
0
1
44
1.07
250296--250458
55
2.8
64
75
20
153
54
0
0
44
1.09
250318--250442
48
2.6
47
79
10
137
52
0
0
45
1.11
250978--251013
18
2.0
18
100
0
72
38
22
11
27
1.88
252392--252458
30
2.3
29
75
12
73
65
0
1
32
1.02
253051--253114
24
2.5
26
82
12
80
53
0
0
46
1.00
256049--256095
2
23.5
2
100
0
94
0
48
0
51
1.00
256239--256269
2
15.5
2
100
0
62
0
48
0
51
1.00
257310--257337
5
5.6
5
100
0
56
17
0
0
82
0.68
257577--257614
2
19.0
2
100
0
76
0
50
0
50
1.00
258819--258850
15
2.1
15
94
5
55
53
6
0
40
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
260551--260585
2
17.5
2
100
0
70
51
0
48
0
1.00
264099--264137
21
1.9
20
84
5
51
51
7
12
28
1.67
268452--268480
2
14.5
2
100
0
58
51
0
48
0
1.00
268557--268612
17
3.2
18
78
14
55
71
3
7
17
1.23
268741--268767
3
9.0
3
100
0
54
66
0
33
0
0.92
270766--270863
51
1.9
51
85
0
133
29
13
23
33
1.93
272218--272648
215
2.0
212
83
4
544
33
18
18
28
1.95
289572--289667
31
3.1
30
76
11
97
35
0
0
64
0.94

Tables:   1   2   3

The End!