Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold4
Parameters: 2 7 7 80 10 50 1000
Length:  5986281

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   

This is table  31  of  31  ( 3628 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5950241--5950302
15
3.9
15
74
12
61
62
4
0
32
1.16
5951859--5951897
15
2.5
15
87
4
60
69
0
0
30
0.89
5952805--5952835
10
3.0
10
95
4
53
0
22
0
77
0.77
5952817--5952843
14
1.9
14
100
0
54
0
22
0
77
0.76
5952813--5952853
14
2.5
17
74
25
52
2
24
0
73
0.96
5953515--5953576
15
3.9
15
74
12
61
62
4
0
32
1.16
5954717--5954766
22
2.2
21
76
13
55
62
8
0
30
1.24
5955072--5955115
22
2.0
22
82
13
54
50
6
0
43
1.29
5955110--5955148
15
2.5
15
87
4
60
69
0
0
30
0.89
5955132--5955189
24
2.4
24
83
11
66
60
3
0
36
1.14
5956060--5956093
13
2.7
13
86
4
52
0
14
0
85
0.60
5956059--5956097
14
3.1
13
89
10
55
0
20
0
79
0.73
5956373--5956422
22
2.2
21
76
13
55
62
8
0
30
1.24
5956766--5956804
15
2.5
15
87
4
60
69
0
0
30
0.89
5956788--5956845
24
2.4
24
83
11
66
62
3
0
34
1.12
5964201--5964297
50
1.9
51
87
6
144
30
24
10
34
1.89
5964236--5964456
79
2.8
80
82
6
263
29
27
11
31
1.92
5964394--5964506
51
2.2
51
80
0
127
30
28
8
31
1.87
5964319--5964552
130
1.8
130
84
7
323
29
26
11
32
1.91
5966827--5966868
2
21.5
2
95
4
77
50
0
0
50
1.00
5967103--5967155
2
26.5
2
96
0
97
50
1
0
47
1.12
5972634--5972659
13
2.0
13
100
0
52
15
15
15
53
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5974528--5974590
16
4.1
14
76
17
54
58
3
3
34
1.30
5975891--5975967
37
2.1
36
81
9
86
44
3
6
45
1.48
5976057--5976097
16
2.6
16
88
0
64
60
12
0
26
1.31
5979858--5979934
35
2.2
36
95
2
138
44
11
1
42
1.49
5979864--5979927
20
3.5
20
65
20
57
43
12
1
42
1.52
5980524--5980588
32
2.0
33
87
3
96
27
16
15
40
1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31

The End!