genome.fa.s411.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold411
Parameters: 2 7 7 80 10 50 1000
Length:  403047

Tables:   1   2   3   

This is table  3  of  3  ( 332 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280557--281107	171	3.2	169	85	6	644	28	30	17	23	1.97
281671--281742	20	3.6	20	76	0	63	33	12	11	43	1.78
285864--285901	3	12.7	3	100	0	76	34	0	34	31	1.58
286616--286649	15	2.3	15	95	5	61	82	11	0	5	0.83
288050--288091	17	2.4	19	88	11	63	42	7	0	50	1.30
288079--288135	24	2.4	24	77	8	64	36	1	0	61	1.07
291130--291182	21	2.5	21	81	6	63	35	28	3	32	1.75
294317--294354	17	2.2	17	86	9	51	68	2	0	28	1.03
296696--296750	18	3.0	18	74	10	58	50	14	0	34	1.43
296666--296845	73	2.4	74	82	1	200	47	13	0	37	1.48
296776--296814	21	1.9	21	94	5	71	46	17	0	35	1.49
302846--302899	25	2.2	25	82	0	63	68	0	29	1	1.00
302918--302973	28	1.9	28	82	7	67	35	3	5	55	1.40
303740--303785	23	2.0	23	95	0	83	50	17	10	21	1.77
303849--303879	2	15.5	2	100	0	62	48	0	0	51	1.00
304907--304946	20	1.9	22	90	10	66	55	0	0	45	0.99
304896--304955	22	2.8	22	80	14	65	56	0	0	43	0.99
305446--305482	16	2.3	17	90	9	60	83	8	2	5	0.88
310101--310129	13	2.1	14	93	6	51	34	0	3	62	1.12
310580--310605	2	13.0	2	100	0	52	50	0	0	50	1.00
311505--311530	7	3.7	7	100	0	52	88	0	0	11	0.52
312054--312097	8	5.4	8	81	5	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312054--312103	17	3.1	16	83	8	57	48	0	0	52	1.00
312287--312337	3	17.0	3	91	0	84	62	0	1	35	1.06
315606--315712	48	2.2	48	91	0	169	37	21	20	20	1.95
319393--319418	2	13.0	2	100	0	52	50	0	0	50	1.00
320701--320734	17	1.9	17	88	5	50	38	0	2	58	1.13
320719--320786	32	2.2	32	76	21	72	42	2	7	47	1.46
320780--320822	3	14.7	3	95	4	79	32	0	0	67	0.91
321308--321351	15	2.7	17	79	13	56	68	2	4	25	1.20
321518--321559	22	2.0	22	95	4	77	42	7	9	40	1.65
321657--321723	33	2.0	33	88	0	98	32	11	14	40	1.83
321977--322051	20	3.8	20	80	0	78	36	13	10	40	1.79
322963--323018	22	2.5	23	94	5	105	17	10	8	62	1.52
322971--323025	22	2.6	21	88	5	58	20	9	9	61	1.52
327472--327517	21	2.2	21	84	0	56	63	4	8	23	1.42
333510--333534	13	1.9	13	100	0	50	32	16	16	36	1.90
333489--333552	32	2.0	33	87	9	96	29	17	14	39	1.88
342274--342316	22	2.0	22	100	0	86	27	23	13	34	1.93
344296--344353	13	4.0	13	74	23	53	34	15	17	32	1.91
344391--344416	13	2.0	13	100	0	52	30	15	15	38	1.88
346068--346157	45	2.0	45	82	4	110	41	11	30	17	1.84
346079--346314	45	5.3	44	72	18	145	39	13	27	20	1.89
345995--346355	43	8.3	43	73	10	254	39	13	27	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346047--346355	88	3.5	88	76	10	317	39	12	28	19	1.88
346331--346536	60	3.4	61	87	3	301	25	19	28	26	1.99
346301--347340	223	4.5	224	77	13	909	28	19	27	24	1.98
346396--346699	163	1.9	163	86	2	441	26	18	28	26	1.98
346562--347222	60	10.9	62	84	5	681	28	19	26	25	1.99
346567--347223	122	5.4	122	82	6	724	29	19	26	24	1.99
349549--349602	20	2.7	21	86	11	69	46	14	12	25	1.81
349618--349672	20	2.8	20	97	0	101	43	14	16	25	1.86
350111--350184	18	4.0	18	76	15	62	78	2	10	8	1.06
350111--350165	18	3.0	20	79	15	64	80	1	10	7	0.99
350781--351211	111	3.9	111	82	3	438	33	15	11	39	1.83
352921--353063	41	3.5	40	78	5	144	16	25	16	41	1.89
352921--353089	81	2.1	81	83	2	205	17	25	16	40	1.90
353103--353338	42	5.6	41	70	8	118	20	21	10	47	1.79
353106--353398	84	3.5	83	84	4	336	20	21	10	47	1.80
354625--354996	162	2.3	163	82	4	455	31	12	9	46	1.73
355568--355596	14	2.1	14	93	6	51	72	0	27	0	0.85
356962--357057	51	1.9	50	89	2	147	45	13	12	28	1.80
357093--357146	20	2.7	20	82	0	72	33	16	7	42	1.76
357115--357160	20	2.2	20	84	3	56	34	17	8	39	1.80
357733--358387	52	12.4	52	73	10	364	36	15	21	26	1.93
357733--358387	53	12.4	53	74	10	349	36	15	21	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357932--358404	105	4.5	105	75	7	300	37	14	21	26	1.92
362061--362126	27	2.4	27	82	5	71	27	27	21	24	1.99
363088--363131	18	2.3	20	85	11	58	36	0	2	61	1.09
364108--364181	20	3.7	19	83	7	85	37	14	10	36	1.82
374778--374817	20	2.1	19	90	4	62	55	5	0	40	1.22
374784--374839	19	2.9	19	82	15	62	55	1	0	42	1.10
374811--374854	15	2.8	15	80	19	54	59	0	0	40	0.98
379735--379782	22	2.2	22	92	0	78	56	0	0	43	0.99
380683--380945	90	2.9	91	83	2	307	45	7	8	38	1.65
380683--380960	91	3.1	90	82	3	299	44	8	8	38	1.66
381235--381299	29	2.2	29	89	5	96	35	0	0	64	0.94
381252--381322	29	2.4	29	81	4	81	35	0	1	63	1.03
381292--381331	19	2.1	19	85	0	53	47	0	2	50	1.14
382413--382455	14	3.0	14	79	3	50	58	0	4	37	1.19
383153--383183	2	15.5	2	100	0	62	51	0	48	0	1.00
384132--384180	24	1.9	26	88	12	75	51	0	0	48	1.00
385832--385943	32	3.4	32	82	9	136	43	5	1	49	1.36
385824--385949	64	1.9	66	85	9	177	44	4	2	48	1.36
389047--389132	24	3.8	24	70	17	76	41	2	44	11	1.53
389071--389141	18	3.6	18	72	20	61	43	2	42	11	1.55
389038--389156	42	2.8	42	89	0	184	42	2	45	9	1.49
394816--394866	8	6.6	8	80	17	54	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394818--394867	16	3.3	15	84	15	68	40	0	0	60	0.97
394818--394867	7	6.7	7	80	19	57	40	0	0	60	0.97
394832--394881	22	2.3	22	92	0	82	36	0	2	62	1.07
394826--394898	16	4.7	15	80	15	62	34	0	1	64	1.02

Tables:   1   2   3

The End!