genome.fa.s421.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold421
Parameters: 2 7 7 80 10 50 1000
Length:  441760

Tables:   1   2   3   

This is table  2  of  3  ( 346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170730--170768	15	2.5	17	84	16	57	30	17	10	41	1.83
170813--170936	47	2.6	48	82	3	146	43	17	11	27	1.83
171090--171710	52	12.0	52	75	5	402	35	21	19	24	1.96
171160--171712	207	2.7	207	80	5	530	35	21	19	24	1.96
171170--171655	257	1.9	258	84	2	663	35	21	19	24	1.96
171086--171721	104	6.2	103	76	4	460	35	21	19	24	1.96
171997--172760	387	2.0	387	99	0	1510	33	13	13	39	1.83
173638--173981	168	2.0	171	93	3	595	29	11	19	40	1.86
177338--177539	79	2.6	78	81	4	210	28	17	29	24	1.97
177491--177568	28	2.8	28	86	0	93	21	19	35	23	1.96
177523--177793	131	2.0	132	85	5	368	32	11	26	30	1.91
177523--177805	134	2.1	132	85	6	358	31	12	25	30	1.92
179422--179474	20	2.7	20	85	8	72	41	16	13	28	1.86
185621--185659	13	3.0	13	96	0	69	30	17	15	35	1.91
185771--185816	21	2.2	20	81	11	58	32	19	4	43	1.71
187268--187310	22	2.0	20	86	8	59	18	9	13	58	1.62
188210--188262	20	2.7	20	85	8	72	41	16	13	28	1.86
189582--189610	10	3.0	10	95	5	51	0	0	20	79	0.74
190124--190176	20	2.7	20	100	0	106	47	15	15	22	1.82
190200--190251	13	3.5	13	73	26	50	36	17	13	32	1.89
190208--190272	19	3.7	19	75	23	79	38	15	12	33	1.85
190200--190270	32	2.2	32	97	0	133	36	16	12	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190308--190365	21	2.7	22	81	7	75	32	15	15	36	1.89
191559--191633	20	3.8	20	83	0	96	33	13	12	41	1.81
203348--203377	15	1.9	16	93	6	53	10	30	33	26	1.89
205614--205665	8	6.6	8	76	10	54	82	11	3	1	0.88
206880--207039	84	1.9	84	89	0	248	31	28	16	23	1.96
207045--207115	36	1.9	37	94	2	126	30	29	16	22	1.96
207141--207231	32	2.9	34	76	18	106	28	27	19	24	1.99
206880--207250	28	13.1	29	72	12	225	29	28	17	23	1.97
208096--208170	20	3.8	20	83	0	105	32	13	13	41	1.83
212284--212340	19	3.0	19	78	0	69	40	14	14	31	1.85
212323--212349	13	2.1	13	100	0	54	40	14	14	29	1.86
212929--212973	23	2.0	23	91	4	74	31	26	4	37	1.76
212948--213011	31	2.1	31	88	5	94	37	21	3	37	1.70
213332--213395	33	1.9	33	87	0	92	25	18	28	28	1.98
219431--219455	3	8.3	3	100	0	50	32	36	0	32	1.58
221172--221196	13	1.9	13	100	0	50	32	16	20	32	1.94
221754--221796	21	2.0	21	91	8	70	34	23	4	37	1.76
223698--223724	13	2.1	13	100	0	54	40	14	14	29	1.86
230116--230168	22	2.5	22	81	9	56	43	9	7	39	1.65
231822--231859	20	1.9	20	88	0	58	65	2	0	31	1.06
231823--231866	7	6.4	7	81	5	54	68	2	0	29	1.02
234286--234337	24	2.2	24	82	6	61	23	5	3	67	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235732--236044	155	2.0	155	80	3	344	25	16	19	38	1.92
239455--239493	17	2.3	17	90	0	60	23	0	5	71	1.05
239466--239514	22	2.2	23	81	3	55	22	0	6	71	1.08
241616--242039	208	2.0	210	85	0	573	26	15	17	40	1.90
254355--254414	2	31.0	2	76	6	52	43	3	6	46	1.46
254420--254471	15	3.4	15	72	15	52	51	1	0	46	1.12
254461--254494	18	2.0	17	88	11	52	76	0	0	23	0.79
255000--255078	35	2.2	36	82	8	90	46	2	1	49	1.23
254998--255065	20	3.3	20	68	13	50	47	1	1	50	1.19
256548--256600	20	2.6	21	81	6	63	60	0	0	39	0.97
258270--258319	23	2.2	23	89	7	75	68	0	0	32	0.90
258270--258308	12	3.3	12	89	3	62	71	0	0	28	0.86
258270--258334	21	3.0	21	82	13	62	64	1	0	33	1.03
258283--258325	11	3.9	11	81	6	52	65	0	0	34	0.93
258357--258396	20	2.1	20	86	9	57	52	0	0	47	1.00
266759--266803	22	2.0	22	100	0	90	44	0	13	42	1.43
271252--271288	20	1.9	20	94	5	67	40	0	8	51	1.32
274297--274334	15	2.5	15	95	0	67	13	55	10	21	1.67
274297--274340	18	2.4	18	80	0	61	11	56	9	22	1.62
277317--277350	11	3.0	11	91	4	50	85	2	11	0	0.71
277322--277350	6	5.0	6	91	8	51	86	0	13	0	0.58
278081--278106	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284247--284271	13	1.9	13	100	0	50	36	16	16	32	1.90
284227--284296	33	2.1	33	89	0	104	34	11	14	40	1.82
284337--284361	13	1.9	13	100	0	50	32	16	16	36	1.90
288039--288105	37	1.9	35	88	11	102	29	25	11	32	1.92
288543--288594	19	2.7	20	87	6	79	28	13	15	42	1.85
289312--289418	53	2.0	53	96	0	196	34	19	3	42	1.69
289751--289796	21	2.2	21	88	3	67	30	26	8	34	1.86
290634--290658	13	1.9	13	100	0	50	32	16	16	36	1.90
293834--293900	37	1.9	35	88	11	102	29	25	11	32	1.92
294338--294389	19	2.7	20	87	6	79	28	13	15	42	1.85
295457--295521	32	2.0	32	84	3	85	40	15	13	30	1.86
301129--301195	33	2.0	33	88	0	98	34	11	13	40	1.81
301149--301173	13	1.9	13	100	0	50	36	16	16	32	1.90
301240--301264	13	1.9	13	100	0	50	32	16	16	36	1.90
301273--301393	52	2.3	52	97	0	224	34	18	18	28	1.94
308695--308724	1	30.0	1	93	0	51	96	3	0	0	0.21
309695--310133	34	13.9	30	81	14	202	21	35	13	28	1.92
309697--310228	68	8.4	58	77	16	263	21	36	13	29	1.92
309852--310334	34	14.6	34	80	12	449	20	34	13	31	1.91
309694--310205	95	5.3	93	80	14	446	20	36	13	29	1.91
309760--310205	129	3.4	128	91	4	639	20	36	13	29	1.91
310146--310336	61	2.9	60	72	20	177	19	32	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310174--310227	27	2.0	27	92	0	90	22	37	14	25	1.93
309819--310307	95	5.1	97	79	12	315	20	34	13	31	1.91
310203--310339	73	1.9	72	86	5	197	18	29	12	39	1.87
310208--310359	73	2.1	71	81	6	173	19	32	11	35	1.88
310344--310413	33	2.1	35	94	5	126	25	37	17	20	1.94
310413--310973	49	11.6	49	81	8	661	25	26	17	31	1.97
310408--310974	98	5.9	98	93	2	834	25	26	17	31	1.97
310594--311103	49	9.8	55	80	8	351	24	25	16	33	1.96
311901--311967	33	2.0	33	88	0	98	34	11	13	40	1.81
311921--311945	13	1.9	13	100	0	50	36	16	16	32	1.90
312012--312036	13	1.9	13	100	0	50	32	16	16	36	1.90
312045--312165	52	2.3	52	97	0	224	34	18	18	28	1.94
319101--319134	1	34.0	1	87	0	50	94	2	2	0	0.38
319378--319413	16	2.2	16	90	0	54	86	5	8	0	0.72
319453--319484	16	2.1	16	94	5	57	90	9	0	0	0.45
320458--320572	30	3.9	30	82	14	157	23	36	13	26	1.92
320460--320572	58	1.9	58	94	0	199	23	36	14	25	1.93
320621--320973	34	10.7	34	85	8	439	20	36	13	29	1.91
320457--320973	95	5.3	93	78	16	411	20	36	13	29	1.91
320591--320973	129	3.0	129	93	3	628	20	36	13	28	1.91
320622--321101	34	14.6	33	79	12	307	20	35	13	30	1.91
320942--320995	27	2.0	27	92	0	90	22	37	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320971--321101	36	3.7	36	76	11	119	19	32	12	35	1.90
321111--321181	32	2.1	36	89	10	114	25	38	15	21	1.92
321180--321802	49	12.9	49	78	8	618	25	26	17	31	1.97
321180--321802	98	6.4	98	86	6	717	25	26	17	31	1.97
321178--321802	195	3.2	193	84	8	751	24	26	17	31	1.97
322672--322738	33	2.0	33	88	0	98	34	11	13	40	1.81
322692--322716	13	1.9	13	100	0	50	36	16	16	32	1.90
322780--322804	13	1.9	13	100	0	50	32	16	16	36	1.90
322813--322933	52	2.3	52	97	0	224	34	18	18	28	1.94
329873--329911	19	2.0	20	90	5	62	74	7	12	5	1.20

Tables:   1   2   3