genome.fa.s421.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold421
Parameters: 2 7 7 80 10 50 1000
Length:  441760

Tables:   1   2   3   

This is table  3  of  3  ( 346 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330151--330181	16	1.9	16	93	0	53	87	6	6	0	0.68
331136--331336	31	6.5	30	79	11	199	24	29	16	29	1.97
331136--331336	61	3.2	61	89	6	280	24	29	16	29	1.97
331315--331827	61	8.0	62	74	18	348	20	34	12	32	1.91
331318--331659	87	3.7	88	78	17	277	22	35	13	28	1.92
331441--331490	26	2.0	26	96	4	93	28	38	16	18	1.91
331469--331822	34	10.6	34	78	14	269	20	34	13	32	1.91
331469--331693	69	3.4	67	82	10	266	20	36	13	29	1.91
331662--331715	27	2.0	27	92	0	90	22	37	14	25	1.93
331691--331827	73	1.9	72	86	5	197	18	29	12	39	1.87
331696--331847	73	2.1	71	81	6	173	19	32	11	35	1.88
331832--331901	33	2.1	35	94	5	126	25	37	17	20	1.94
331901--332525	49	12.9	49	79	10	667	25	25	17	31	1.97
331896--332525	98	6.5	98	90	2	852	25	26	17	31	1.97
333394--333460	33	2.0	33	88	0	98	34	11	13	40	1.81
333414--333438	13	1.9	13	100	0	50	36	16	16	32	1.90
333504--333528	13	1.9	13	100	0	50	32	16	16	36	1.90
333537--333657	52	2.3	52	97	0	224	34	18	18	28	1.94
340960--340995	1	36.0	1	94	0	63	97	2	0	0	0.18
341966--342404	34	13.9	30	81	14	202	21	35	13	28	1.92
341968--342499	68	8.4	58	77	16	263	21	36	13	29	1.92
342123--342605	34	14.6	34	80	12	449	20	34	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341965--342476	95	5.3	93	80	14	446	20	36	13	29	1.91
342031--342476	129	3.4	128	91	4	639	20	36	13	29	1.91
342417--342607	61	2.9	60	72	20	177	19	32	13	35	1.90
342445--342498	27	2.0	27	92	0	90	22	37	14	25	1.93
342090--342578	95	5.1	97	79	12	315	20	34	13	31	1.91
342474--342610	73	1.9	72	86	5	197	18	29	12	39	1.87
342479--342630	73	2.1	71	81	6	173	19	32	11	35	1.88
342615--342684	33	2.1	35	94	5	126	25	37	17	20	1.94
342684--343244	49	11.6	49	81	8	661	25	26	17	31	1.97
342679--343245	98	5.9	98	93	2	834	25	26	17	31	1.97
342865--343374	49	9.8	55	80	8	351	24	25	16	33	1.96
344172--344238	33	2.0	33	88	0	98	34	11	13	40	1.81
344192--344216	13	1.9	13	100	0	50	36	16	16	32	1.90
344283--344307	13	1.9	13	100	0	50	32	16	16	36	1.90
344316--344436	52	2.3	52	97	0	224	34	18	18	28	1.94
351886--351993	52	2.1	52	87	0	153	34	13	19	32	1.91
352406--352471	35	1.9	34	84	3	87	33	12	22	31	1.91
357657--357710	19	2.7	19	74	17	56	33	12	16	37	1.87
357697--357722	13	2.0	13	100	0	52	30	15	15	38	1.88
357794--357821	13	2.2	13	100	0	56	28	14	17	39	1.89
362191--362216	13	2.0	13	100	0	52	30	15	15	38	1.88
364294--364332	20	1.9	20	84	5	51	10	28	43	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370951--370976	13	2.0	13	100	0	52	30	15	15	38	1.88
371458--371490	16	2.1	16	88	11	50	24	27	0	48	1.51
373372--373703	155	2.1	156	80	5	377	40	18	13	27	1.88
375158--375195	18	2.1	18	85	9	51	5	18	0	76	0.97
380708--380743	17	2.2	16	90	9	56	19	0	2	77	0.88
382490--383049	138	4.1	138	96	0	1014	13	23	13	48	1.79
383369--383470	43	2.4	43	82	6	129	43	18	24	13	1.87
388185--388218	10	3.4	10	95	0	59	26	32	20	20	1.97
388242--388267	13	2.0	13	100	0	52	30	15	15	38	1.88
390660--390706	21	2.3	21	82	10	62	44	4	19	31	1.70
397020--397045	13	2.0	13	100	0	52	30	15	15	38	1.88
397116--397170	20	2.8	20	88	5	76	29	12	16	41	1.85
406123--406165	13	3.4	13	90	6	70	23	0	0	76	0.78
407897--408455	138	4.1	138	94	0	985	14	23	13	48	1.79
412881--412914	10	3.1	11	87	12	52	47	0	0	52	1.00
412892--413006	35	3.2	35	77	17	119	46	1	0	52	1.11
414797--415000	76	2.6	78	80	5	218	28	16	29	25	1.96
414952--415023	28	2.6	28	88	0	99	23	19	34	22	1.96
415012--415181	52	3.3	50	79	11	182	32	12	24	29	1.93
415155--415236	27	3.0	28	82	10	98	26	21	29	21	1.99
417653--417678	13	2.0	13	100	0	52	38	15	15	30	1.88
417632--417698	33	2.0	33	88	0	98	43	16	14	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417718--417785	19	3.9	18	76	23	83	38	14	11	35	1.83
417740--417764	13	1.9	13	100	0	50	32	16	16	36	1.90
417721--417783	32	2.0	32	96	0	117	36	15	12	34	1.86
417841--417897	21	2.7	21	97	0	105	36	19	10	33	1.86
417900--417930	16	1.9	16	100	0	62	12	3	0	83	0.75
417902--417934	17	1.9	17	100	0	66	12	6	0	81	0.85
418361--418691	79	4.2	78	81	6	339	32	15	24	27	1.95
418643--418718	28	2.7	28	87	0	98	25	17	32	25	1.96
418566--418797	107	2.2	107	82	6	274	30	14	26	28	1.95
418673--418844	79	2.2	78	82	7	213	31	11	26	30	1.92
422243--422277	2	17.5	2	87	0	52	48	2	0	48	1.16
423057--423108	24	2.1	24	89	10	79	7	32	0	59	1.26
423773--423938	48	3.5	48	87	3	246	34	17	27	20	1.95
424047--425080	28	36.0	28	85	6	837	23	17	31	27	1.97
424042--425082	88	12.1	85	83	6	847	24	17	31	27	1.97
424749--425075	27	11.9	27	89	4	435	29	14	32	23	1.95
424737--425091	55	6.4	55	86	6	459	29	14	31	23	1.95
424753--425075	82	3.9	83	89	4	476	28	15	31	24	1.95
430522--430639	52	2.3	52	92	0	191	28	18	16	36	1.92
430546--430659	52	2.2	52	88	3	167	30	19	17	32	1.95
430648--430672	13	1.9	13	100	0	50	36	16	16	32	1.90
430738--430762	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430716--430782	33	2.0	33	88	0	98	40	13	11	34	1.81
436500--436539	19	2.0	20	85	4	55	17	37	25	20	1.94
438438--438509	29	2.5	29	90	0	117	40	16	16	26	1.90
438500--438564	33	2.0	33	87	0	94	43	12	12	32	1.79
438533--438584	20	2.6	20	96	0	95	46	11	11	30	1.76
438469--438600	53	2.6	52	78	9	155	42	12	15	29	1.84
438594--438631	20	1.9	20	94	0	58	50	18	10	21	1.76
439273--439341	16	4.3	16	80	7	77	21	17	26	34	1.95
439447--439514	30	2.4	29	79	15	79	41	2	2	52	1.31
439538--439576	18	2.2	17	90	4	60	46	0	0	53	1.00
439550--439585	18	2.0	18	88	0	54	50	0	0	50	1.00
440986--441060	16	4.7	16	81	6	73	2	16	34	46	1.61
440988--441077	32	2.8	31	81	6	90	4	14	35	45	1.65
441246--441308	26	2.4	25	84	7	81	39	0	1	58	1.07
441282--441501	36	6.4	36	71	16	169	41	1	1	55	1.16
441291--441369	27	3.0	26	72	15	65	39	0	1	59	1.06
441443--441515	33	2.2	33	85	9	96	36	0	1	61	1.05
441615--441667	21	2.5	21	84	0	70	37	20	1	39	1.64

Tables:   1   2   3

The End!