Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold430
Parameters: 2 7 7 80 10 50 1000
Length:  426104

Tables:   1   2   3   4   

This is table  4  of  4  ( 402 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
401768--401804
17
2.2
18
85
9
51
40
0
0
59
0.97
401774--401824
21
2.5
20
84
15
77
47
0
0
52
1.00
402486--402543
24
2.5
24
70
13
57
55
0
1
43
1.10
403296--403347
20
2.5
20
81
9
52
59
1
0
38
1.08
403532--403574
13
3.1
15
81
18
58
62
0
0
37
0.95
403522--403574
26
2.0
27
85
10
74
64
0
0
35
0.94
403531--403574
14
3.3
14
82
17
58
61
0
0
38
0.96
403814--403840
4
6.8
4
100
0
54
22
0
0
77
0.76
404057--404105
19
2.5
20
80
12
66
75
0
2
22
0.90
404473--404512
20
2.0
21
90
5
64
57
7
2
32
1.40
405193--405235
16
2.6
17
81
7
61
51
0
6
41
1.29
406142--406183
4
10.8
4
89
5
59
69
0
0
30
0.89
406465--406506
17
2.4
18
84
4
50
33
2
0
64
1.07
407766--407806
19
2.0
21
90
9
68
31
0
7
60
1.24
407971--408007
2
18.5
2
100
0
74
51
0
48
0
1.00
408668--408708
18
2.2
20
91
8
68
63
0
0
36
0.95
409086--409122
10
3.7
10
85
0
56
59
0
0
40
0.97
409084--409122
20
1.9
21
89
5
62
58
0
0
41
0.98
409064--409129
30
2.3
30
80
17
77
54
0
0
45
0.99
409618--409665
22
2.2
21
82
17
62
45
4
0
50
1.21
409625--409666
22
1.9
22
90
9
68
47
2
0
50
1.14
409898--409930
15
2.1
16
88
11
50
60
0
0
39
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
410142--410185
14
3.1
14
80
6
61
43
2
2
52
1.26
410554--410591
4
9.8
4
88
5
60
0
18
0
81
0.69
415078--415121
13
3.4
13
80
0
61
47
4
0
47
1.22
415131--415194
33
1.9
33
87
0
92
45
3
1
50
1.27
415393--415423
3
10.0
3
93
6
53
32
0
0
67
0.91
415539--415576
2
19.0
2
94
0
67
50
2
0
47
1.15
415887--415937
17
2.7
19
80
20
63
54
0
3
41
1.19
417741--417779
19
2.1
19
90
9
62
46
0
0
53
1.00
417741--417780
20
2.1
19
90
4
62
47
0
0
52
1.00
418092--418149
28
2.0
30
86
6
84
50
1
0
48
1.11
419230--419277
20
2.5
19
80
6
53
47
2
0
50
1.12
419243--419285
20
2.3
18
84
8
50
55
4
0
39
1.20
420041--420089
23
2.1
23
81
7
55
26
0
10
63
1.26
420341--420405
19
3.7
18
84
12
82
75
0
23
1
0.89
420341--420407
10
7.0
10
70
14
52
74
0
23
1
0.90
423498--423530
11
2.8
12
90
9
50
78
0
6
15
0.93
424867--424911
17
2.6
18
82
10
58
66
2
0
31
1.04
424873--424909
12
3.2
12
85
14
51
67
2
0
29
1.04
424974--425013
18
2.2
18
86
8
55
40
5
2
52
1.37
425069--425132
25
2.6
25
87
5
85
39
12
0
48
1.41

Tables:   1   2   3   4

The End!