genome.fa.s435.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold435
Parameters: 2 7 7 80 10 50 1000
Length:  524057

Tables:   1   2   3   

This is table  2  of  3  ( 293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243995--244019	13	1.9	13	100	0	50	40	0	4	56	1.18
244019--244083	14	4.6	14	80	7	69	53	1	3	41	1.25
244342--244397	14	3.9	14	81	9	69	57	1	0	41	1.09
244030--244654	314	2.0	314	100	0	1250	36	9	16	37	1.80
244925--244968	15	2.8	16	83	13	56	47	2	0	50	1.13
244928--244964	15	2.5	15	91	4	58	51	2	0	45	1.15
245407--245435	12	2.3	13	94	5	51	51	6	0	41	1.28
245896--245982	20	4.3	20	77	11	88	73	2	22	1	1.01
245922--245995	28	2.9	24	79	18	78	70	2	27	0	1.01
245881--245985	19	5.3	19	70	16	63	73	1	23	0	0.99
245896--246001	20	5.1	20	72	10	70	73	1	23	0	0.99
245937--246001	22	2.7	25	77	11	66	70	1	27	0	0.96
246026--246101	26	2.8	26	77	18	68	48	1	1	48	1.18
246094--246172	38	2.1	38	81	13	92	27	0	6	65	1.16
246104--246180	32	2.6	31	78	15	83	24	0	7	67	1.17
246216--246248	17	1.9	17	93	0	57	24	3	12	60	1.46
247013--247055	19	2.4	17	80	7	50	48	0	4	46	1.22
253027--253257	51	4.7	51	75	17	234	38	11	19	30	1.87
253077--253297	20	10.8	20	66	21	109	38	11	18	32	1.86
253110--253257	55	2.8	54	90	4	221	37	10	20	31	1.86
253027--253304	146	1.9	146	93	0	475	38	11	19	30	1.88
255628--255673	14	3.6	14	72	22	55	65	17	0	17	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255628--255674	24	2.0	24	100	0	94	63	17	0	19	1.30
258937--258971	2	17.5	2	100	0	70	48	0	0	51	1.00
261706--261753	24	2.0	24	84	4	62	52	6	8	33	1.57
263496--263520	2	12.5	2	100	0	50	52	0	0	48	1.00
264558--264601	2	23.5	2	82	13	58	50	0	2	47	1.13
265091--265175	31	2.7	31	83	3	91	55	5	9	29	1.55
265364--265392	15	1.9	15	100	0	58	27	13	13	44	1.82
270291--270327	17	2.2	17	90	9	58	59	0	0	40	0.97
270766--270809	22	2.0	21	87	12	63	59	0	0	40	0.98
272509--272542	5	7.0	5	86	6	52	79	0	0	20	0.73
284723--284761	2	19.5	2	100	0	78	51	0	0	48	1.00
285030--285097	18	3.7	18	75	16	68	44	0	0	55	0.99
285023--285099	18	4.3	17	73	16	66	45	1	0	53	1.08
285280--285304	2	12.5	2	100	0	50	52	0	0	48	1.00
285480--285524	6	7.5	6	89	0	72	15	15	48	20	1.80
286176--286203	5	5.6	5	100	0	56	78	0	0	21	0.75
286829--286870	2	21.0	2	100	0	84	50	0	0	50	1.00
288635--288669	16	2.1	17	89	5	54	82	0	17	0	0.66
288641--288670	10	3.0	10	95	0	51	86	0	13	0	0.57
288922--288956	16	2.1	17	89	5	54	82	0	17	0	0.66
288928--288957	10	3.0	10	95	0	51	86	0	13	0	0.57
288497--289070	287	2.0	287	100	0	1148	32	17	27	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293188--294120	190	4.9	190	90	2	1400	37	15	13	33	1.87
303004--303082	11	8.1	10	68	19	51	55	2	0	41	1.13
303006--303042	18	2.0	19	89	5	58	51	2	0	45	1.15
303005--303085	18	4.3	18	69	23	51	56	2	0	40	1.12
303954--303985	5	6.4	5	100	0	64	81	0	0	18	0.70
303979--304013	17	2.1	16	89	5	52	65	0	0	34	0.93
307114--307178	33	2.0	33	82	11	80	44	3	0	52	1.16
307120--307203	40	2.2	36	81	10	98	40	1	0	58	1.06
307120--307189	20	3.5	20	74	14	63	42	1	0	55	1.08
307152--307203	20	2.5	20	81	3	59	38	0	0	61	0.96
317378--317410	2	17.0	2	87	6	50	45	0	0	54	0.99
317708--317755	21	2.3	20	82	6	60	47	0	6	45	1.27
321351--321404	24	2.2	24	80	6	65	24	27	5	42	1.76
325948--326026	27	3.0	27	87	7	101	46	20	2	30	1.64
327474--327515	20	2.1	20	82	8	50	33	7	4	54	1.49
329231--329319	31	3.0	30	79	14	103	40	21	4	33	1.73
329563--329608	23	2.0	24	86	4	67	41	2	0	56	1.11
331389--331426	2	19.0	2	94	0	67	50	2	0	47	1.15
332827--332858	2	16.0	2	93	0	55	50	3	0	46	1.17
337914--337943	16	1.9	15	93	6	51	6	6	6	80	1.04
337946--337973	2	14.0	2	100	0	56	50	0	0	50	1.00
338295--338328	2	17.0	2	93	0	59	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343337--343366	15	1.9	16	93	6	53	43	0	0	56	0.99
343591--343637	6	8.3	6	77	13	55	57	0	0	42	0.98
343585--343638	16	3.3	16	94	5	99	59	0	0	40	0.98
344855--344892	2	19.0	2	88	0	58	44	0	0	55	0.99
346029--346066	2	19.5	2	94	5	69	50	0	0	50	1.00
351707--351805	3	33.0	3	77	0	72	21	42	2	34	1.64
351714--351805	12	7.7	12	78	4	87	20	42	2	34	1.64
357201--357282	42	2.0	43	85	9	116	26	8	4	59	1.47
357856--357957	38	2.7	38	89	1	141	28	29	12	29	1.93
361481--361606	38	3.5	36	82	8	136	26	27	14	30	1.95
361544--361606	31	2.0	31	93	0	108	28	26	14	30	1.95
361554--361631	31	2.5	31	87	2	104	33	23	8	34	1.86
363529--363561	2	16.5	2	100	0	66	51	0	0	48	1.00
363806--363866	21	3.1	19	75	13	61	60	1	1	36	1.16
367664--367699	14	2.6	14	91	4	56	36	11	2	50	1.53
369468--369509	21	2.0	21	95	0	75	61	7	4	26	1.42
374466--374500	15	2.2	16	90	5	54	45	2	0	51	1.16
375390--375433	16	2.8	16	92	0	70	50	4	4	40	1.43
377929--377966	20	1.9	20	100	0	76	39	0	5	55	1.23
378696--378746	26	2.0	26	85	14	70	37	3	3	54	1.37
378786--378872	3	29.3	3	75	15	65	37	0	0	62	0.96
382751--382793	3	14.3	3	100	0	86	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386331--386710	190	2.0	189	85	7	520	28	13	14	43	1.83
391977--392121	50	2.9	51	89	4	231	43	12	16	27	1.84
397145--397183	20	2.0	20	94	0	69	56	0	0	43	0.99
397579--397667	21	4.4	20	68	27	55	48	2	0	49	1.13
397582--397632	18	2.8	17	80	11	57	52	0	0	47	1.00
397594--397636	16	2.6	17	85	10	54	51	0	0	48	1.00
397986--398014	14	2.1	14	100	0	58	51	6	0	41	1.28
399732--399779	22	2.2	22	85	7	62	29	4	6	60	1.40
399729--399781	21	2.4	22	87	9	72	28	3	5	62	1.35
402058--402098	17	2.6	17	85	11	52	39	2	0	58	1.11
402447--402529	43	1.9	45	83	9	111	37	3	0	59	1.15
406963--406996	12	2.8	12	83	16	52	14	23	8	52	1.69
411296--411336	3	13.7	3	100	0	82	65	0	0	34	0.93
412920--412964	22	2.1	21	84	12	56	57	0	4	37	1.19
413142--413177	14	2.6	14	100	0	72	55	0	0	44	0.99
413170--413232	31	2.0	31	84	3	81	55	3	1	39	1.25
413263--413308	23	2.0	23	82	0	56	56	0	0	43	0.99
413182--413322	31	4.8	29	68	17	96	52	0	4	41	1.28
413781--413841	28	2.1	29	85	8	81	39	0	3	57	1.15
414724--414753	2	15.0	2	92	0	51	0	46	0	53	1.00
416854--416899	17	2.9	17	78	12	53	58	0	0	41	0.98
421365--421422	21	2.8	21	86	0	80	39	17	10	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423398--423459	32	1.9	33	87	9	92	35	16	17	30	1.92
437510--437564	28	2.0	27	85	7	74	41	0	1	56	1.10
437509--437599	31	3.1	30	80	9	82	34	0	3	62	1.11
437547--437619	31	2.3	31	79	13	78	27	0	5	67	1.13
438190--438221	14	2.1	16	88	11	50	31	0	9	59	1.29
439368--439409	11	3.7	11	78	15	50	26	2	0	71	0.98
439718--439750	11	3.3	10	84	16	50	27	3	0	69	1.03
439755--439816	17	3.6	17	80	8	72	29	3	1	66	1.17
439823--439906	14	6.0	14	77	18	86	42	0	0	57	0.99
440209--440258	23	2.2	23	85	7	66	74	2	14	10	1.16

Tables:   1   2   3