Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold435
Parameters: 2 7 7 80 10 50 1000
Length:  524057

Tables:   1   2   3   

This is table  3  of  3  ( 293 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
445129--445359
115
2.0
115
100
0
462
25
18
23
33
1.97
446174--446223
3
16.7
3
95
0
91
30
0
2
68
1.01
446380--446437
28
2.1
28
83
6
73
44
1
10
43
1.48
447099--447155
21
2.6
22
83
5
80
35
5
3
56
1.39
447406--447454
22
2.2
23
82
10
57
42
6
0
51
1.27
447531--447576
11
4.3
11
81
13
60
43
2
2
52
1.25
447508--447576
22
3.2
21
77
4
66
39
2
4
53
1.36
452312--452340
3
9.7
3
100
0
58
68
0
0
31
0.89
454650--454680
16
1.9
16
100
0
62
32
9
0
58
1.31
457242--457390
29
5.0
28
71
22
101
51
1
1
45
1.18
457285--457352
33
2.0
34
86
8
95
52
1
0
45
1.09
457200--457385
90
2.1
91
84
7
245
53
1
1
44
1.17
457286--457367
34
2.5
32
80
9
85
54
1
0
43
1.07
460556--460677
62
2.0
62
86
3
174
57
2
6
33
1.38
467493--467517
2
12.5
2
100
0
50
52
0
0
48
1.00
469515--469580
24
2.8
24
88
4
89
46
7
9
36
1.64
469534--469582
24
2.0
24
100
0
98
44
8
8
38
1.64
470713--470755
22
2.0
22
86
9
61
48
0
0
51
1.00
470735--470771
15
2.4
16
82
17
51
51
0
0
48
1.00
471998--472111
56
2.1
55
80
9
128
41
0
3
54
1.23
472039--472136
6
16.5
6
69
15
53
38
1
1
59
1.11
472039--472076
18
2.1
18
90
9
60
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
472053--472148
48
2.1
45
81
13
106
40
1
1
57
1.13
472039--472212
29
6.1
29
69
22
84
40
1
1
56
1.17
472554--472634
35
2.3
35
83
10
96
32
2
0
65
1.06
474015--474044
3
10.0
3
100
0
60
33
0
0
66
0.92
474706--474759
17
3.1
17
78
5
54
55
1
0
42
1.10
475259--475295
6
6.5
6
87
12
60
86
0
0
13
0.57
475482--475529
23
2.1
23
100
0
96
50
16
16
16
1.79
478744--479070
173
1.9
175
98
1
631
22
6
18
52
1.68
479383--479428
23
2.0
23
100
0
92
47
17
17
17
1.83
479614--479721
56
1.9
56
98
0
207
26
28
11
33
1.91
491336--491477
21
6.7
21
73
7
99
37
2
5
54
1.39
491492--491540
20
2.5
20
86
0
71
34
0
14
51
1.43
491407--491666
99
2.7
98
79
7
244
33
3
10
52
1.53
491621--491666
21
2.2
21
88
0
65
39
2
2
56
1.24
492080--492119
21
1.9
21
85
10
55
37
5
10
47
1.59
492103--492425
21
14.9
20
68
21
97
36
5
7
50
1.54
492166--492279
21
5.5
21
76
12
110
38
4
5
51
1.44
492082--492424
42
7.9
43
69
18
169
37
5
7
49
1.54
492322--492415
21
4.5
21
79
2
100
39
5
5
50
1.48
492380--492469
11
8.2
10
71
17
54
43
2
3
51
1.30
493368--493418
3
17.0
3
100
0
102
66
0
0
33
0.92
493710--493760
23
2.2
23
80
16
61
70
3
1
23
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
493709--493764
27
2.1
27
83
6
69
71
3
1
23
1.11
494003--494031
14
2.0
15
93
6
51
48
0
10
41
1.37
494269--494312
17
2.5
17
82
13
54
47
0
0
52
1.00
496322--496540
112
2.0
112
97
0
411
32
12
18
36
1.88
504307--504338
16
2.0
16
93
0
55
43
0
3
53
1.16
511561--511600
2
20.0
2
89
0
62
45
0
0
55
0.99
515009--515188
89
2.0
89
87
0
261
42
15
19
22
1.88
517564--517628
18
3.6
19
76
15
59
60
1
3
35
1.22
517662--517698
18
2.1
18
94
0
65
32
10
18
37
1.86

Tables:   1   2   3

The End!