genome.fa.s436.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold436
Parameters: 2 7 7 80 10 50 1000
Length:  700632

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 580 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591318--591385	34	2.0	35	85	2	93	26	32	14	26	1.95
591443--591528	40	2.0	42	82	8	104	19	22	12	45	1.84
591468--591564	45	2.1	47	86	5	137	16	22	11	49	1.77
591518--591617	37	2.8	37	83	3	123	24	24	14	38	1.92
591522--591629	35	3.0	35	76	12	105	24	25	13	36	1.93
591565--591646	35	2.4	34	82	8	96	30	30	14	24	1.95
591565--591696	68	2.0	66	80	7	149	29	30	13	26	1.94
591764--591914	52	2.9	52	80	3	171	25	22	16	35	1.95
592548--592589	20	2.1	20	86	0	57	45	14	19	21	1.85
592646--592785	52	2.7	52	86	0	190	31	16	11	40	1.84
604477--604515	20	2.0	20	94	0	69	30	17	10	41	1.83
605197--605350	61	2.5	61	82	5	188	36	13	25	24	1.92
605295--605395	51	2.0	51	80	0	112	33	16	23	25	1.96
605484--605611	52	2.5	52	90	0	193	35	19	22	21	1.96
605668--606424	32	23.7	31	78	7	642	20	16	31	30	1.95
605768--606418	63	10.2	64	78	8	550	20	16	32	30	1.95
607572--607767	33	6.2	33	73	16	180	18	32	12	36	1.89
607764--608621	49	18.0	48	74	12	627	25	25	17	31	1.97
607766--608560	143	5.6	141	79	10	756	25	25	17	31	1.97
608112--608266	39	3.7	39	76	15	157	26	26	20	27	1.99
608058--608318	88	2.9	88	93	2	416	26	26	18	28	1.98
608228--608619	52	7.9	50	74	11	306	26	26	15	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608277--608463	92	2.0	92	90	2	295	23	26	18	32	1.97
611714--611811	48	2.0	50	90	8	155	28	17	18	35	1.93
611793--611868	34	2.5	29	84	16	100	30	18	18	32	1.95
611877--611901	13	1.9	13	100	0	50	36	16	16	32	1.90
611964--611988	13	1.9	13	100	0	50	32	16	16	36	1.90
612970--613037	21	3.2	21	63	19	50	27	17	27	26	1.98
612925--613288	43	7.8	47	79	11	383	30	18	25	25	1.98
612925--613293	92	4.0	92	93	2	596	30	18	25	25	1.98
613062--613129	21	3.2	20	66	25	50	29	16	27	26	1.97
613288--613384	32	3.0	33	90	3	169	18	18	34	28	1.95
613374--613528	34	4.5	34	89	2	238	34	10	33	20	1.88
613374--613528	69	2.2	68	90	4	240	34	10	33	20	1.88
613457--613578	29	4.0	29	81	11	127	28	13	31	25	1.94
614610--614635	13	2.0	13	100	0	52	30	15	15	38	1.88
614590--614653	32	2.0	33	87	3	94	28	14	17	40	1.88
619267--619304	15	2.5	15	91	0	58	13	21	15	50	1.78
623326--623351	13	2.0	13	100	0	52	30	15	15	38	1.88
623306--623369	32	2.0	33	87	3	94	28	14	17	40	1.88
624893--624969	1	77.0	1	75	0	64	0	2	10	87	0.65
624895--624971	17	4.8	16	81	12	86	0	2	11	85	0.69
624895--624971	10	7.1	11	78	12	79	0	2	11	85	0.69
626253--626590	173	2.0	173	95	1	617	33	12	18	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626601--626711	27	4.1	27	95	1	197	45	7	32	15	1.73
627911--628102	79	2.4	79	96	0	348	27	27	14	30	1.95
628034--628154	52	2.3	52	85	4	156	27	23	14	34	1.93
634235--634866	61	10.5	60	87	5	886	26	28	18	26	1.98
634235--634866	121	5.3	120	91	4	958	26	28	18	26	1.98
634771--634961	99	1.9	101	88	4	289	25	30	17	26	1.97
634870--635328	60	7.6	60	90	5	671	25	29	19	25	1.99
635329--635841	60	8.4	60	88	4	642	25	28	19	26	1.99
635231--635418	100	1.9	98	87	4	279	25	29	18	27	1.98
635329--635852	61	8.6	60	89	5	718	25	28	19	27	1.99
635329--635841	121	4.2	121	89	4	741	25	28	19	26	1.99
635694--636002	160	1.9	161	88	5	466	25	28	18	26	1.98
635861--636787	60	15.5	59	80	10	949	26	27	19	26	1.99
635755--635942	100	1.9	98	87	4	279	25	29	18	26	1.98
635857--636775	237	3.9	235	87	4	1228	26	27	19	26	1.99
635892--636770	414	2.1	410	84	7	1121	26	28	19	25	1.99
636692--636967	103	2.8	98	85	8	346	24	28	17	28	1.98
636920--637089	61	2.8	62	82	11	226	25	25	20	28	1.99
637076--637208	42	3.2	41	76	17	132	19	28	12	39	1.87
637671--638008	173	2.0	173	95	1	617	33	11	19	35	1.88
638019--638104	27	3.2	27	98	0	163	45	6	31	16	1.74
639357--639545	79	2.4	79	94	0	324	27	25	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639480--639600	52	2.3	52	84	4	156	28	23	13	35	1.92
653176--653324	52	2.9	52	89	4	239	31	17	18	32	1.94
653313--653337	13	1.9	13	100	0	50	36	16	16	32	1.90
653376--653433	20	3.0	20	84	2	73	46	13	10	29	1.77
662527--663190	30	21.2	30	79	10	580	24	29	14	32	1.94
662527--663190	126	5.3	124	81	9	724	24	29	14	32	1.94
662524--663154	156	4.0	158	83	7	732	24	29	14	32	1.94
663167--663335	33	5.0	32	79	11	167	17	31	13	37	1.89
663382--664022	49	13.9	44	75	18	410	25	25	18	30	1.98
663587--663784	39	4.8	39	81	12	227	26	27	20	25	1.99
663539--663746	87	2.4	87	95	0	380	25	27	19	26	1.99
663796--663976	92	2.0	92	87	0	263	25	22	17	33	1.96
663904--664099	52	3.8	51	80	7	200	25	26	15	32	1.96
664860--664887	13	2.2	13	100	0	56	28	14	17	39	1.89
670760--670803	23	2.0	22	81	4	52	65	15	4	13	1.41
671103--671545	79	5.6	79	79	5	382	39	9	20	29	1.85
671104--671565	158	2.9	156	76	10	433	39	10	20	29	1.85
673841--673957	51	2.3	51	83	2	146	39	15	16	29	1.89
678256--678445	52	3.7	52	79	4	222	35	16	23	24	1.95
678530--678652	32	3.8	32	82	4	108	13	15	34	36	1.87
678678--679210	28	19.2	27	83	4	471	24	17	26	30	1.97
678678--679210	166	3.2	165	82	6	576	24	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679232--679381	31	5.0	31	79	5	157	28	15	31	24	1.95
679246--679379	60	2.2	61	85	4	173	29	15	29	24	1.96
679336--679744	28	14.3	29	82	6	381	30	12	31	25	1.93
679234--679744	85	5.9	86	81	6	471	29	13	30	26	1.94
679336--679714	57	6.6	58	83	6	445	29	12	31	26	1.93
679673--679842	30	5.6	30	78	2	133	37	13	24	24	1.91
679410--679882	85	5.4	91	81	3	262	32	13	29	25	1.93
679719--679898	91	2.0	92	80	3	202	33	15	27	23	1.94
686291--686342	19	2.7	19	78	3	59	36	11	17	34	1.86
687972--687998	13	2.1	13	100	0	54	40	14	14	29	1.86
694236--694290	19	2.8	20	83	5	76	36	16	18	29	1.92
695627--695705	20	3.8	20	78	6	95	36	15	10	37	1.81

Tables:   1   2   3   4   5

The End!