Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold442
Parameters: 2 7 7 80 10 50 1000
Length:  369669

Tables:   1   2   3   

This is table  3  of  3  ( 283 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
313953--313997
17
2.5
19
82
10
51
62
0
2
35
1.08
313971--314055
42
2.0
41
84
6
109
57
0
1
41
1.06
313967--314052
15
5.9
15
70
19
65
55
0
1
43
1.07
313989--314079
42
2.2
42
84
5
114
52
1
1
45
1.15
314041--314100
25
2.3
27
77
11
72
45
1
1
51
1.21
314103--314181
26
3.0
26
78
9
79
46
1
1
50
1.17
314175--314242
27
2.4
28
76
16
70
54
2
2
39
1.31
314755--314850
23
4.5
22
79
11
110
54
4
0
41
1.20
316944--316972
4
7.2
4
100
0
58
0
27
0
72
0.85
324555--324610
17
3.2
17
73
9
58
58
3
0
37
1.15
325062--325121
24
2.5
24
78
13
61
50
1
3
45
1.28
325241--325276
18
2.0
18
88
0
54
55
0
2
41
1.14
325617--325701
37
2.3
36
76
13
86
62
1
2
34
1.16
325722--325757
15
2.5
14
86
8
54
2
13
0
83
0.76
326125--326177
12
4.4
12
77
13
56
64
1
1
32
1.15
326307--326336
8
3.6
8
95
4
51
0
16
0
83
0.65
326286--326336
17
3.0
17
80
5
59
1
19
0
78
0.85
326650--326690
15
2.8
15
82
14
50
2
21
0
75
0.92
326795--326839
11
4.1
11
81
18
58
71
0
2
26
0.98
326789--326841
21
2.6
21
75
22
58
69
0
1
28
0.99
326966--327067
38
2.7
40
81
14
103
62
2
2
31
1.25
330082--330141
21
2.9
21
84
0
75
33
23
5
38
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
331021--331058
2
19.0
2
100
0
76
50
0
0
50
1.00
334981--335028
2
24.0
2
79
8
53
45
2
0
52
1.12
334981--335031
21
2.4
21
80
6
59
45
1
0
52
1.12
334989--335031
17
2.5
17
80
0
50
44
2
0
53
1.13
338830--338886
22
2.6
22
91
0
87
36
12
17
33
1.87
338954--339007
20
2.7
20
91
2
81
33
16
11
38
1.84
340723--340757
15
2.2
16
90
10
54
60
0
5
34
1.21
345600--345808
79
2.8
72
77
11
213
34
11
24
29
1.91
345654--345869
79
2.7
78
81
7
247
36
9
23
31
1.86
348697--348745
24
2.2
22
80
16
57
44
4
2
48
1.33
349796--349836
3
13.7
3
100
0
82
68
0
0
31
0.90
352524--352589
12
5.2
13
76
10
66
72
0
0
27
0.85
352536--352589
19
2.8
20
83
13
76
74
0
0
25
0.83
352524--352591
33
2.1
33
83
10
86
73
0
0
26
0.83
352528--352599
16
4.7
15
72
16
58
70
1
0
27
0.95
362005--362041
16
2.3
16
100
0
74
21
0
27
51
1.48
366072--366241
79
2.2
79
84
0
214
32
12
27
27
1.93
366201--366299
28
3.5
26
75
16
81
30
12
29
28
1.93
366367--366442
28
2.7
29
84
8
86
32
17
26
23
1.96
366463--366593
51
2.6
51
87
3
176
35
12
24
26
1.92
368876--369017
20
6.8
19
75
15
104
43
14
14
27
1.84

Tables:   1   2   3

The End!