Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold444
Parameters: 2 7 7 80 10 50 1000
Length:  554371

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 509 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
506411--506448
2
19.0
2
94
0
67
52
0
0
47
1.00
511685--511758
4
19.0
4
87
5
80
50
33
0
16
1.45
511685--511758
12
6.3
12
85
6
98
50
33
0
16
1.45
513543--513596
12
4.8
12
75
13
51
31
0
1
66
1.02
513536--513596
26
2.5
24
75
14
63
31
0
1
67
1.01
513536--513590
21
2.8
20
79
17
69
29
0
1
69
0.99
513536--513595
15
3.7
17
78
12
65
30
0
1
68
0.99
516453--516480
2
14.0
2
100
0
56
50
0
0
50
1.00
517509--517554
14
2.8
17
84
12
53
67
6
0
26
1.15
518716--518749
2
17.0
2
100
0
68
50
0
0
50
1.00
521262--521470
56
3.7
56
89
2
305
29
14
10
44
1.79
521940--521975
2
18.0
2
100
0
72
50
0
0
50
1.00
525085--525117
2
16.5
2
100
0
66
48
0
0
51
1.00
533312--533358
24
2.0
25
83
8
62
63
2
0
34
1.06
534709--534754
2
23.0
2
100
0
92
50
0
0
50
1.00
539098--539136
19
2.1
19
90
0
60
23
5
25
46
1.73
539154--539186
15
2.2
15
100
0
66
48
12
12
27
1.76
542015--542199
86
2.2
86
88
2
264
35
28
8
28
1.85
542149--542250
51
2.0
51
92
0
168
30
27
13
28
1.94
543057--543100
3
15.0
3
95
4
81
68
0
31
0
0.90
543404--543505
30
3.4
31
75
8
111
45
0
0
53
1.06
543484--543540
21
2.7
21
83
5
71
47
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
543518--543612
26
3.8
26
69
19
69
51
1
1
46
1.15
543587--543628
20
2.1
20
82
8
50
47
0
0
52
1.00
545385--545415
2
15.5
2
100
0
62
51
0
0
48
1.00
549033--549076
21
2.1
21
100
0
88
20
9
25
45
1.80
551660--551708
24
2.0
26
92
8
84
26
0
20
53
1.46
551974--552002
2
15.0
2
92
7
51
48
0
0
51
1.00
551974--551999
13
2.0
13
100
0
52
46
0
0
53
1.00

Tables:   1   2   3   4   5

The End!