genome.fa.s454.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold454
Parameters: 2 7 7 80 10 50 1000
Length:  526734

Tables:   1   2   3   4   

This is table  4  of  4  ( 420 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444727--444800	27	2.7	28	87	2	96	25	33	18	21	1.96
444785--444959	52	3.4	51	84	5	199	27	25	13	33	1.93
447486--447536	20	2.5	20	100	0	102	43	11	13	31	1.80
447486--447578	20	4.6	19	86	4	96	41	12	12	32	1.81
447526--447578	21	2.6	20	81	3	61	39	15	11	33	1.83
462422--462462	2	21.0	2	95	5	75	51	0	0	48	1.00
463004--463030	2	13.5	2	100	0	54	51	48	0	0	1.00
465363--465391	3	9.7	3	100	0	58	68	0	0	31	0.89
466830--466881	18	2.7	19	82	14	54	55	1	7	34	1.39
467803--467915	53	2.1	53	81	3	129	23	12	23	40	1.88
469192--469927	165	4.5	164	80	7	668	32	9	9	49	1.66
469182--469813	330	1.9	331	82	6	782	32	9	9	49	1.67
470397--470448	14	3.7	14	79	7	52	75	1	23	0	0.91
471146--471183	19	2.0	20	84	5	51	23	7	13	55	1.64
480551--480589	1	39.0	1	89	0	60	94	5	0	0	0.29
484910--484952	2	21.5	2	100	0	86	0	48	0	51	1.00
494062--494086	13	1.9	13	100	0	50	32	16	16	36	1.90
496839--496873	2	17.5	2	100	0	70	51	0	48	0	1.00
497144--497180	2	18.5	2	100	0	74	51	0	0	48	1.00
498016--498060	2	22.5	2	100	0	90	0	48	0	51	1.00
498060--498091	2	16.0	2	100	0	64	50	0	0	50	1.00
498194--498264	30	2.4	30	92	0	115	22	33	14	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506774--506832	7	8.6	7	83	3	66	6	0	47	45	1.29
506767--506832	14	4.8	14	79	3	71	9	0	45	45	1.35
506761--506832	34	2.1	35	89	2	110	11	0	43	45	1.39
506767--506822	13	4.1	14	83	2	53	10	0	44	44	1.38
506783--506853	34	2.1	34	84	5	90	12	1	42	43	1.51
506896--506955	14	4.2	14	70	8	50	6	5	51	36	1.50
506920--507052	52	2.6	51	87	7	187	11	6	43	39	1.65
507195--507271	34	2.3	34	82	10	97	0	0	71	28	0.86
507020--509175	7	289.4	7	78	13	1073	4	5	52	38	1.44
508396--508451	27	2.0	28	86	3	78	1	5	50	42	1.35
508537--509175	8	79.6	8	71	17	292	3	3	53	39	1.35
508599--508640	6	6.7	6	91	8	66	0	0	71	28	0.86
508980--509040	25	2.4	25	81	8	70	6	3	49	40	1.45
509200--509282	8	9.9	8	71	17	53	3	6	48	42	1.45
509251--509299	17	2.9	16	82	14	55	8	8	48	34	1.62
509339--509419	35	2.4	32	80	13	92	2	7	49	40	1.44
509510--511002	38	40.2	36	69	24	186	4	16	39	39	1.68
509985--510068	24	3.6	22	78	18	73	1	17	39	41	1.58
510001--510049	17	2.9	17	85	11	66	0	22	36	40	1.54
510139--512546	96	24.4	96	69	22	323	4	14	41	39	1.65
510935--511045	17	6.6	17	71	19	65	5	14	37	42	1.69
511151--511284	24	5.6	24	69	24	79	2	14	44	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511632--511709	18	4.9	17	83	12	69	2	16	42	38	1.62
509418--526358	61	279.0	57	71	20	6659	4	13	41	40	1.66
511823--511879	17	3.5	17	81	13	59	7	17	33	42	1.76
509412--526361	22	740.3	22	72	21	4853	4	13	41	40	1.66
512970--513007	20	2.0	18	90	10	58	10	0	47	42	1.38
513031--513089	19	3.0	19	77	15	57	5	8	49	37	1.55
513970--514004	17	2.1	17	100	0	70	5	0	60	34	1.21
514438--526360	103	112.9	104	71	21	2190	4	14	40	40	1.67
515836--526349	37	277.6	36	71	19	1348	4	14	40	40	1.67
509381--526359	15	1111.7	15	72	19	7166	4	13	41	40	1.66
515901--525847	81	119.9	83	70	21	892	4	14	40	40	1.67
520433--520466	17	2.1	16	94	5	59	0	14	55	29	1.40
526565--526619	15	3.7	14	83	11	74	1	16	40	41	1.59
509411--526619	7	2255.3	7	73	20	9060	4	14	41	40	1.66
526674--526707	15	2.3	15	90	10	52	11	76	5	5	1.14
526674--526731	16	3.6	16	78	15	57	8	79	3	8	1.04

Tables:   1   2   3   4

The End!