genome.fa.s456.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold456
Parameters: 2 7 7 80 10 50 1000
Length:  970336

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255208--255235	2	14.0	2	100	0	56	0	0	50	50	1.00
256418--256534	57	2.1	57	100	0	234	28	27	5	39	1.78
267887--267929	20	2.2	20	87	8	61	34	0	0	65	0.93
267948--267993	22	2.1	21	84	4	56	63	0	6	30	1.20
267946--267993	21	2.3	20	75	10	51	62	0	6	31	1.20
268115--268161	21	2.3	21	81	3	60	40	0	0	59	0.97
268113--268164	23	2.2	24	80	10	63	40	0	0	59	0.97
268131--268174	19	2.4	18	82	10	54	31	0	0	68	0.90
268173--268220	14	3.4	14	81	16	62	62	0	0	37	0.95
272601--272653	26	2.1	25	82	3	61	62	0	0	37	0.96
276537--276679	71	2.0	71	100	0	286	34	18	16	30	1.93
279050--279087	2	19.0	2	94	0	67	0	52	0	47	1.00
290299--290327	2	14.5	2	100	0	58	51	0	0	48	1.00
296369--296406	19	2.0	20	89	5	60	57	0	0	42	0.98
296999--297029	2	15.5	2	100	0	62	51	0	0	48	1.00
305278--305327	25	2.0	25	96	0	91	16	18	8	58	1.62
307415--307448	6	6.0	6	90	10	54	85	0	14	0	0.60
309651--309687	19	1.9	19	88	0	56	59	0	0	40	0.97
314987--315067	6	13.5	6	85	0	81	49	1	46	2	1.23
314990--315037	3	16.0	3	82	0	60	58	0	41	0	0.98
315510--315551	15	2.8	15	88	0	57	76	0	23	0	0.79
315508--315554	23	2.2	20	85	14	60	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315554--315582	14	2.0	15	93	6	51	27	0	6	65	1.18
315679--315743	20	3.3	20	71	16	73	29	3	3	64	1.23
315670--315773	38	2.7	38	90	0	154	30	3	2	62	1.28
316202--316234	16	2.0	17	88	5	50	63	3	6	27	1.32
318651--318682	2	16.0	2	100	0	64	50	0	0	50	1.00
324745--324945	50	4.0	50	83	3	210	34	17	16	30	1.93
324745--324945	100	2.0	100	82	5	246	34	17	16	30	1.93
328048--328118	35	2.0	35	94	0	124	26	19	16	36	1.94
329363--329522	50	3.2	50	76	5	153	33	16	17	32	1.93
329386--329561	50	3.5	49	78	9	176	34	15	18	31	1.92
329363--329559	100	2.0	100	84	2	261	33	17	17	31	1.93
329513--329604	43	2.1	43	88	4	132	39	15	13	32	1.85
334907--334936	11	2.6	12	94	5	53	50	0	0	50	1.00
335272--335321	19	2.5	20	83	9	66	48	0	0	52	1.00
335728--335765	19	2.0	20	89	5	60	76	2	0	21	0.91
339066--339111	2	24.0	2	91	8	78	50	0	0	50	1.00
343561--343587	2	13.5	2	100	0	54	51	0	48	0	1.00
345374--345430	29	2.0	29	100	0	114	59	10	15	14	1.60
347982--348245	144	1.8	143	91	0	438	16	13	26	43	1.84
350396--350428	2	16.5	2	93	0	57	0	3	48	48	1.17
351773--351797	2	12.5	2	100	0	50	0	52	0	48	1.00
357035--357067	11	2.8	12	81	9	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371023--371056	6	5.5	6	89	6	50	55	0	0	44	0.99
371023--371058	13	2.8	13	91	4	56	55	0	0	44	0.99
371133--371173	11	3.8	11	84	9	50	58	0	2	39	1.11
377689--377721	15	2.1	16	88	5	50	45	0	0	54	0.99
378426--378455	13	2.2	14	94	5	53	30	0	0	70	0.88
378425--378463	19	2.1	19	85	9	53	33	0	2	64	1.08
378530--378559	12	2.4	12	94	5	51	63	0	0	36	0.95
378514--378591	40	2.1	39	85	9	108	50	0	0	50	1.00
378519--378595	32	2.4	32	78	2	84	49	0	0	50	1.00
378550--378624	33	2.3	32	84	11	91	46	0	1	52	1.09
378592--378629	18	2.1	18	85	9	51	50	0	2	47	1.15
379689--379718	2	15.0	2	100	0	60	50	0	0	50	1.00
380869--380902	14	2.4	14	95	0	59	2	14	38	44	1.61
387303--387336	2	17.5	2	87	6	52	50	0	0	50	1.00
387292--387336	23	2.0	23	86	8	65	48	4	0	46	1.22
387305--387334	15	2.0	15	93	0	51	50	0	0	50	1.00
387303--387337	17	2.1	17	94	0	61	51	0	0	48	1.00
387714--387795	20	4.1	20	73	17	71	40	2	1	56	1.20
388781--388881	51	2.0	51	100	0	202	35	5	18	39	1.76
399254--399279	2	13.0	2	100	0	52	50	0	0	50	1.00
400514--400554	2	21.0	2	95	5	75	51	0	0	48	1.00
400575--400638	22	2.8	24	81	15	82	57	1	3	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400915--400970	20	2.8	20	76	13	60	50	0	1	48	1.11
400964--400994	16	1.9	16	93	0	53	61	0	0	38	0.96
401009--401038	15	2.0	15	93	0	51	56	0	0	43	0.99
401613--401656	22	2.0	22	95	0	79	25	9	6	59	1.53
403139--403192	21	2.5	21	75	3	54	31	1	0	66	1.02
403210--403244	17	2.0	18	88	5	54	20	0	2	77	0.90
405086--405209	26	4.7	27	76	10	96	46	20	8	25	1.77
405115--405214	27	3.7	27	80	4	103	49	19	9	23	1.76
409061--409130	26	2.7	25	80	4	68	51	8	2	37	1.47
418603--418660	28	2.0	28	83	9	73	55	1	0	43	1.10
419686--419743	29	2.0	29	96	0	107	32	29	6	31	1.84
428993--429080	38	2.3	38	84	0	113	38	11	4	45	1.61
428990--429161	76	2.3	76	83	9	208	41	8	2	47	1.48
429020--429184	38	4.5	36	77	8	145	42	4	1	50	1.34
429111--429158	24	2.0	24	87	4	69	41	2	0	56	1.11
429123--429179	28	1.9	30	86	10	82	43	0	0	56	0.99
429636--429671	10	3.6	10	100	0	72	50	8	0	41	1.33
438713--438940	89	2.6	88	84	4	264	43	7	3	46	1.47
439861--439903	2	21.5	2	100	0	86	48	0	0	51	1.00
444257--444297	21	2.0	20	85	4	55	43	2	0	53	1.13
448559--448669	45	2.4	45	92	1	186	18	30	9	41	1.82
448647--448674	5	5.6	5	100	0	56	21	39	0	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448602--448713	55	2.1	54	94	1	197	18	30	9	41	1.83
448667--448749	35	2.3	35	89	2	121	19	31	12	37	1.88
448559--448751	45	4.3	45	71	13	155	18	31	10	39	1.84
449122--449197	23	3.3	23	77	15	77	63	1	1	34	1.11
449731--449768	17	2.2	17	90	0	58	39	0	0	60	0.97
450589--450618	2	15.0	2	92	0	51	50	3	0	46	1.18
450863--450927	26	2.4	28	80	12	73	32	1	0	66	1.01
450862--450935	26	2.9	25	76	13	71	33	1	0	64	1.02
450921--450959	19	2.1	19	85	0	51	23	2	0	74	0.94
453245--453272	2	14.0	2	100	0	56	50	0	0	50	1.00
457448--457474	2	13.5	2	100	0	54	0	48	0	51	1.00
459349--459727	105	3.6	105	80	10	380	46	5	3	45	1.42
459670--459794	66	1.9	67	86	6	184	49	4	2	44	1.34
464762--464803	5	8.4	5	94	0	75	57	0	2	40	1.12
471536--471591	19	2.8	19	86	5	58	37	0	0	62	0.95
471543--471591	19	2.6	18	84	12	62	34	0	0	65	0.93
471605--471634	2	15.0	2	92	0	51	46	0	0	53	1.00
473504--473529	4	6.5	4	100	0	52	0	23	0	76	0.78
478955--479140	91	2.0	92	96	2	347	25	9	33	31	1.88
482917--482971	23	2.3	24	84	12	69	49	0	0	50	1.00
483511--483553	2	22.0	2	90	4	70	46	0	2	51	1.13
487715--487744	13	2.3	13	94	0	51	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487734--487772	21	1.9	19	90	10	60	58	0	0	41	0.98
487774--487809	17	2.1	18	89	5	56	66	0	0	33	0.92
491355--491383	2	15.0	2	92	7	51	51	0	0	48	1.00
491597--491644	2	25.0	2	85	8	55	43	6	0	50	1.27
492462--492489	2	14.0	2	100	0	56	50	0	0	50	1.00
498549--498596	19	2.5	20	83	6	64	50	0	2	47	1.12
498968--499090	41	3.0	39	81	12	115	55	0	0	43	1.05
499017--499094	30	2.6	30	82	9	88	55	0	0	44	0.99
499450--499527	31	2.5	31	79	4	86	51	0	0	48	1.00
499489--499556	32	2.1	33	81	8	77	44	0	0	55	0.99

Tables:   1   2   3   4   5