genome.fa.s456.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold456
Parameters: 2 7 7 80 10 50 1000
Length:  970336

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 568 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
825197--825242	20	2.3	20	88	0	65	50	15	15	19	1.79
826934--826970	15	2.5	15	90	0	56	48	0	0	51	1.00
830908--830970	29	2.2	29	83	8	76	38	1	1	58	1.17
831022--831060	15	2.6	15	91	0	60	28	0	2	69	1.02
831020--831068	20	2.4	20	86	3	62	28	0	2	69	1.00
832433--832493	6	10.2	6	74	0	50	32	16	16	34	1.91
832432--832499	24	2.8	24	90	0	100	33	16	17	32	1.92
834958--834982	2	12.5	2	100	0	50	52	0	0	48	1.00
837826--837863	16	2.4	16	95	0	67	26	34	0	39	1.57
837873--837911	21	1.9	21	89	5	62	7	17	12	61	1.54
842311--842344	14	2.3	15	90	5	52	44	0	0	55	0.99
846243--846293	17	3.0	17	80	11	59	47	1	0	50	1.12
846326--846395	27	2.6	26	75	11	70	57	0	0	42	0.99
847522--847553	2	16.0	2	93	0	55	46	0	0	53	1.00
848705--848735	2	15.5	2	100	0	62	48	0	0	51	1.00
855064--855103	13	3.2	13	89	3	55	0	10	5	85	0.75
860066--860102	16	2.3	16	90	9	58	21	0	0	78	0.75
860197--860234	18	2.0	20	90	10	62	52	2	0	44	1.14
860807--860854	21	2.2	22	88	3	71	52	0	6	41	1.27
864782--864813	16	2.0	16	100	0	64	50	0	0	50	1.00
865155--865189	6	5.8	6	96	0	61	34	11	17	37	1.85
865544--865604	6	10.5	6	72	13	56	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865544--865600	18	3.3	18	83	11	66	66	0	0	33	0.92
865546--865610	20	3.3	19	78	20	71	67	0	0	32	0.91
865547--865620	20	3.7	20	73	24	66	67	0	0	32	0.91
865645--865700	14	4.3	13	73	15	53	44	0	0	55	0.99
873362--873430	34	2.0	34	100	0	138	62	5	2	28	1.33
873405--873448	23	2.0	23	86	13	65	63	0	0	36	0.95
874338--874371	17	2.1	17	88	5	52	23	5	0	70	1.09
875074--875105	2	16.0	2	100	0	64	50	0	0	50	1.00
876240--876302	27	2.2	29	80	8	76	74	0	19	6	1.02
876253--876303	18	2.8	19	74	14	54	78	0	19	1	0.85
877557--877613	15	3.7	15	81	13	71	43	0	0	56	0.99
880774--880802	2	14.5	2	100	0	58	51	0	0	48	1.00
881565--881910	114	3.0	115	85	4	444	37	13	7	41	1.72
884770--884798	12	2.3	13	94	5	51	24	3	0	72	1.00
885107--885163	28	2.0	30	82	6	73	45	1	1	50	1.22
889070--889167	39	2.5	39	94	0	169	38	16	15	29	1.89
889932--889975	13	3.5	12	80	20	54	43	0	0	56	0.99
890486--890525	17	2.5	16	84	11	55	55	0	0	45	0.99
892152--892195	20	2.1	20	83	8	52	47	4	0	47	1.22
892822--892860	18	2.0	20	85	9	55	43	0	0	56	0.99
893211--893240	2	15.0	2	100	0	60	50	0	0	50	1.00
893338--893386	2	25.0	2	87	4	64	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893543--893725	50	3.7	50	83	4	208	29	15	16	38	1.89
893543--893748	50	4.1	50	76	13	163	29	14	17	37	1.90
896827--896954	59	2.2	59	97	0	238	39	11	23	25	1.88
897572--897831	50	5.2	50	86	0	340	30	17	17	33	1.94
900801--900856	20	2.8	20	74	20	64	60	0	0	39	0.97
901437--901475	20	2.0	19	85	14	53	35	0	0	64	0.94
901614--901721	17	6.7	16	73	18	64	42	0	0	56	1.05
901625--901721	17	5.9	15	79	14	79	43	0	1	55	1.06
901627--901721	50	1.9	50	85	8	131	43	0	1	55	1.06
904656--904694	15	2.3	18	87	12	57	69	0	0	30	0.89
904658--904696	17	2.5	15	83	8	51	66	0	0	33	0.92
906901--906964	25	2.6	25	75	9	67	51	3	0	45	1.17
907588--907678	32	2.7	33	81	8	103	52	1	0	46	1.07
907588--907669	33	2.5	32	86	4	101	52	1	0	46	1.08
907612--907679	16	4.2	17	77	20	58	54	0	0	45	0.99
907599--907714	18	6.4	19	66	24	63	55	0	0	43	1.05
907594--907716	32	4.2	28	69	20	83	56	0	0	43	1.05
910173--910236	13	4.4	14	72	18	51	35	0	4	59	1.18
910185--910251	30	2.2	31	89	7	102	35	0	7	56	1.27
910751--910825	30	2.4	32	82	13	93	62	2	0	34	1.09
911439--911532	41	2.3	41	90	1	145	43	0	6	50	1.28
916883--916914	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
919183--919231	18	2.7	17	87	9	62	65	0	24	10	1.23
922030--922071	2	21.0	2	95	0	75	47	0	0	52	1.00
939503--939528	12	2.2	12	100	0	52	50	23	0	26	1.50
939477--939509	2	16.5	2	100	0	66	51	0	0	48	1.00
941711--941747	18	2.0	20	85	15	53	45	0	0	54	1.00
941716--941749	17	2.1	17	88	5	52	50	0	0	50	1.00
944614--944653	21	2.0	21	85	5	55	42	10	2	45	1.51
944790--944853	24	2.7	24	80	2	76	40	9	3	46	1.52
950238--950267	2	15.0	2	100	0	60	50	0	0	50	1.00
952185--952249	6	10.7	6	77	9	60	41	1	0	56	1.08
952185--952255	32	2.2	33	85	9	103	42	1	0	56	1.08
952185--952240	26	2.2	24	87	6	76	41	1	0	57	1.09
952286--952337	21	2.5	20	75	9	50	53	1	1	42	1.23
958009--958080	30	2.4	30	81	9	76	41	8	2	47	1.48
961557--961603	23	2.0	23	87	0	67	34	12	0	53	1.39
962845--962913	24	2.9	25	70	12	65	50	1	0	47	1.09
964002--964047	21	2.2	21	88	11	69	47	0	0	52	1.00
964103--964140	4	9.5	4	100	0	76	23	0	0	76	0.79
965980--966063	42	2.0	42	86	4	116	25	23	19	32	1.97
966693--966738	21	2.1	22	84	11	60	43	2	2	52	1.25
967610--967655	5	9.8	5	81	13	62	65	0	0	34	0.93
967988--968071	37	2.3	37	89	2	125	51	7	0	41	1.29

Tables:   1   2   3   4   5

The End!