genome.fa.s457.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold457
Parameters: 2 7 7 80 10 50 1000
Length:  607290

Tables:   1   2   3   

This is table  2  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260722--260782	31	2.0	31	93	0	104	55	4	18	21	1.60
261370--261410	21	2.0	21	85	9	57	39	12	9	39	1.76
261450--261520	20	3.5	20	75	11	74	43	15	12	28	1.83
261490--261626	53	2.6	53	92	1	229	38	18	16	27	1.91
261779--261817	20	2.0	20	100	0	78	38	10	20	30	1.86
262100--262157	21	2.8	21	81	5	73	36	15	15	32	1.89
262193--262260	19	3.9	19	78	21	85	35	10	14	39	1.80
262195--262255	32	1.9	32	96	0	113	34	9	16	39	1.82
262300--262326	13	2.1	13	100	0	54	29	14	14	40	1.86
262837--262865	11	2.5	12	94	5	51	86	13	0	0	0.58
264779--264854	27	2.8	27	90	6	109	23	32	21	22	1.98
265985--266098	51	2.2	51	86	6	158	30	18	13	37	1.89
268438--268624	97	1.9	97	86	2	268	30	19	10	40	1.84
268451--268653	97	2.1	96	78	6	212	28	21	10	39	1.87
268840--268900	30	2.0	30	100	0	122	26	13	13	47	1.79
270420--270456	11	3.2	12	81	18	51	48	0	0	51	1.00
270449--270505	28	2.0	29	86	3	80	54	1	3	40	1.28
271772--271805	6	5.5	6	93	6	59	29	0	0	70	0.87
272851--273061	79	2.7	77	80	5	217	32	15	26	26	1.95
273081--273191	51	2.2	51	80	3	125	31	14	24	29	1.94
273255--273323	27	2.5	27	85	2	84	24	17	33	24	1.96
272927--273430	237	2.1	238	84	3	640	32	14	26	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273309--273495	52	3.7	50	82	5	232	33	10	26	30	1.89
275903--275954	21	2.6	21	90	6	81	32	15	13	38	1.86
277705--277787	16	5.3	15	78	13	78	34	1	4	59	1.27
277688--277762	31	2.4	31	84	4	87	29	1	4	65	1.19
277664--277764	16	6.4	16	77	7	84	31	0	4	62	1.23
277854--277892	16	2.6	15	88	11	62	35	0	7	56	1.28
278681--278764	35	2.4	34	76	11	89	44	2	0	53	1.13
287085--287213	27	4.7	27	69	12	77	39	4	6	48	1.51
287145--287228	27	3.2	26	79	5	87	32	7	10	50	1.64
287320--287384	27	2.4	27	82	7	78	36	10	10	41	1.75
288843--288891	17	3.0	17	77	14	50	51	4	6	38	1.46
292312--292349	2	19.0	2	100	0	76	50	0	0	50	1.00
293153--293186	16	2.1	16	88	0	50	61	0	8	29	1.26
293102--293217	61	1.9	61	81	10	139	58	3	12	25	1.50
293517--293571	15	3.6	15	83	11	76	61	0	10	27	1.29
295197--295278	37	2.2	36	91	6	137	39	32	6	21	1.78
295652--295694	22	2.0	22	95	4	79	23	6	9	60	1.51
303521--303559	18	2.0	20	90	9	64	12	12	5	69	1.35
318673--318833	84	1.9	84	85	0	223	17	21	19	42	1.90
318682--318855	84	2.1	84	80	4	190	17	20	18	42	1.89
318918--319457	84	6.5	83	75	7	421	21	25	12	40	1.88
318987--319123	41	3.3	41	73	11	134	20	25	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318931--319168	43	5.6	42	71	11	182	19	26	14	39	1.90
318918--319496	168	3.5	166	74	6	474	21	24	12	40	1.88
319281--319412	41	3.2	41	86	2	174	23	29	11	35	1.90
319318--319457	41	3.4	41	84	3	176	24	26	10	38	1.88
319421--319580	84	1.9	84	82	5	198	20	19	14	45	1.85
319724--319973	84	3.0	84	77	9	213	20	21	14	44	1.87
319922--320100	84	2.1	84	78	9	186	22	22	10	44	1.83
320103--320209	43	2.6	41	75	5	115	17	22	14	44	1.86
319997--320193	43	4.7	43	68	10	138	21	22	12	43	1.86
319981--320209	84	2.7	84	85	2	282	20	22	12	44	1.85
320143--320279	70	2.0	70	86	0	193	18	24	13	43	1.86
320225--320727	41	12.2	41	71	5	206	20	22	14	42	1.88
321291--321331	21	2.1	19	86	9	55	31	7	12	48	1.68
323698--323870	28	6.0	28	80	2	166	31	28	15	24	1.95
338021--338073	20	2.6	21	88	11	83	39	11	16	32	1.85
338139--338198	22	2.9	20	85	7	84	31	21	13	33	1.92
342393--342448	3	18.7	3	100	0	112	32	0	0	67	0.91
343561--343612	20	2.7	20	90	3	79	30	11	19	38	1.87
343642--343706	33	2.0	33	84	6	87	33	15	15	35	1.89
345302--345347	3	15.3	3	90	0	74	34	2	34	28	1.70
349653--349702	21	2.4	22	83	9	61	32	20	0	48	1.50
351921--351968	19	2.5	20	89	3	71	31	14	18	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352001--352065	33	2.0	32	88	11	96	33	15	18	32	1.92
352021--352045	13	1.9	13	100	0	50	36	16	16	32	1.90
353756--353916	80	2.0	80	96	0	295	34	15	13	36	1.86
357323--357378	21	2.7	21	94	2	96	35	10	10	42	1.74
357416--357549	50	2.6	51	91	1	216	30	16	12	40	1.86
357775--357841	27	2.3	31	75	20	88	16	40	16	26	1.89
357783--357838	27	2.1	27	93	0	94	14	35	17	32	1.90
366128--366194	34	2.0	34	100	0	134	49	5	11	32	1.64
371490--371533	23	2.0	21	87	12	63	45	0	0	54	0.99
372030--372068	19	2.1	19	85	9	53	53	0	0	46	1.00
372122--372158	17	2.2	17	90	0	56	32	0	0	67	0.91
379683--379748	16	4.1	15	73	17	53	48	3	0	48	1.17
381062--381088	5	5.4	5	100	0	54	40	22	37	0	1.54
381789--381831	2	21.5	2	90	0	68	51	4	0	44	1.22
382360--382425	20	3.4	19	67	17	55	51	10	1	36	1.46
382360--382448	40	2.3	39	84	9	119	49	12	2	35	1.53
383111--383202	47	1.9	48	86	6	134	34	18	4	42	1.70
384195--384253	24	2.5	23	84	10	75	72	0	3	23	0.99
384197--384254	17	3.1	19	80	16	68	72	0	3	24	1.00
387095--387144	17	2.8	18	75	9	57	44	0	0	56	0.99
387096--387144	9	5.3	10	78	14	52	42	0	0	57	0.99
387181--387206	13	2.0	13	100	0	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387195--387241	19	2.6	18	81	15	53	46	0	0	53	1.00
387561--387604	2	22.0	2	100	0	88	50	0	0	50	1.00
388568--388601	2	17.5	2	87	6	52	52	0	0	47	1.00
388697--388732	17	2.1	17	100	0	72	36	5	44	13	1.68
391486--391546	27	2.2	28	83	13	74	9	14	1	73	1.16
393976--394046	27	2.6	27	86	6	90	46	23	5	23	1.74
395930--395975	21	2.1	22	84	4	58	19	30	19	30	1.97
398549--398619	27	2.6	27	86	6	90	46	22	7	23	1.76
400395--400445	23	2.2	24	85	3	68	43	1	0	54	1.11
404341--404369	2	14.5	2	100	0	58	48	0	0	51	1.00
407399--407567	34	5.0	34	91	0	257	24	0	34	41	1.55
412283--412414	34	3.9	34	91	0	201	24	0	34	40	1.55
412898--412935	2	19.0	2	100	0	76	50	0	0	50	1.00
413120--413180	6	10.0	6	89	3	50	57	0	3	39	1.15
413133--413181	2	25.0	2	83	4	64	53	0	0	46	1.00
414428--414481	26	2.1	26	89	0	81	53	1	27	16	1.53
416018--416062	15	2.9	15	80	3	54	35	17	2	44	1.62
419642--419686	20	2.3	18	85	14	54	73	4	17	4	1.17
421599--421633	3	11.7	3	100	0	70	31	0	0	68	0.90
421702--421746	23	2.0	23	86	8	65	46	6	2	44	1.42
430764--430813	20	2.5	20	86	0	64	42	14	10	34	1.78
431537--431673	61	2.2	61	87	2	186	37	12	27	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431729--431920	52	3.7	53	77	6	158	34	16	22	25	1.95
431621--431921	157	1.9	157	85	5	412	33	15	24	25	1.95
431929--432029	31	3.2	31	78	1	85	19	20	28	30	1.97
432004--432238	28	8.2	27	79	8	218	20	18	32	28	1.96
432004--432238	57	4.1	55	81	8	238	20	18	32	28	1.96
432004--432252	85	2.9	86	82	5	292	21	18	32	28	1.97
433768--433794	14	1.9	14	100	0	54	3	0	7	88	0.61
433753--433799	16	2.9	16	87	3	58	4	4	4	87	0.75
436687--436762	31	2.6	30	82	10	88	7	19	15	56	1.64
436937--436991	15	3.8	15	90	4	78	52	10	16	20	1.73

Tables:   1   2   3