genome.fa.s457.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold457
Parameters: 2 7 7 80 10 50 1000
Length:  607290

Tables:   1   2   3   

This is table  3  of  3  ( 345 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436997--437033	18	2.1	18	89	0	56	43	8	24	24	1.81
437058--437091	15	2.3	15	94	0	59	58	5	14	20	1.57
437073--437123	25	2.0	25	85	7	68	43	3	19	33	1.70
454390--454443	26	2.1	26	100	0	108	40	3	0	55	1.17
454398--454440	13	3.3	13	73	0	50	46	4	0	48	1.22
455423--455476	22	2.5	21	82	11	56	16	11	25	46	1.80
456384--456413	16	1.9	15	93	6	51	26	16	3	53	1.59
456922--457014	48	2.0	47	91	2	150	17	15	25	41	1.88
464158--464245	31	3.0	29	76	14	90	28	6	25	39	1.81
464957--465045	43	2.0	44	89	2	135	26	15	15	41	1.88
465620--465672	27	2.0	27	81	7	63	33	41	1	22	1.65
469237--469271	13	2.7	13	90	0	52	37	22	14	25	1.92
469305--469362	23	2.5	24	88	5	91	41	6	25	25	1.80
469456--469510	21	2.7	20	80	5	65	30	14	16	38	1.89
473608--473806	58	3.4	58	79	8	224	48	18	7	26	1.73
474634--474681	12	3.9	12	86	5	69	0	16	0	83	0.65
476873--476897	13	1.9	13	100	0	50	32	16	16	36	1.90
476850--476916	33	2.0	34	97	2	127	29	17	17	34	1.94
476986--477011	13	2.0	13	100	0	52	38	15	15	30	1.88
487776--487900	52	2.4	52	95	0	223	28	17	18	36	1.94
487776--487920	52	2.8	51	89	4	211	29	17	18	34	1.94
487909--487933	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487973--488042	33	2.1	33	89	0	104	40	14	11	34	1.82
487998--488022	13	1.9	13	100	0	50	32	16	16	36	1.90
488937--489835	49	18.9	49	83	7	1140	31	18	25	24	1.97
488990--489840	92	9.1	92	87	6	1156	31	18	25	24	1.97
488990--489835	190	4.5	189	90	3	1237	31	18	25	24	1.97
489835--490004	32	5.2	33	88	4	258	17	16	36	29	1.92
490006--490713	34	20.8	35	83	9	758	33	12	33	20	1.90
490006--490713	105	6.9	104	84	8	834	33	12	33	20	1.90
490208--490267	27	2.2	27	84	0	75	30	15	36	18	1.91
490080--490871	93	7.9	91	80	13	269	32	13	33	21	1.92
490693--490868	62	2.8	61	85	5	221	28	17	28	25	1.97
490724--490868	31	4.7	31	86	7	197	26	18	28	25	1.98
491798--491829	16	2.0	16	93	0	55	0	6	9	84	0.78
492067--492120	17	3.2	17	82	15	67	0	0	14	85	0.61
492067--492120	9	6.0	9	79	14	58	0	0	14	85	0.61
492086--492127	18	2.3	18	87	4	57	2	2	14	80	0.90
499003--499127	52	2.4	52	95	0	223	28	17	18	36	1.94
499003--499147	52	2.8	51	89	4	211	29	17	18	34	1.94
499136--499160	13	1.9	13	100	0	50	36	16	16	32	1.90
499199--499268	33	2.1	33	89	0	104	40	14	11	34	1.82
499224--499248	13	1.9	13	100	0	50	32	16	16	36	1.90
499758--499788	16	1.9	16	93	0	53	19	12	6	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500498--500522	13	1.9	13	100	0	50	32	16	16	36	1.90
500475--500539	33	2.0	33	93	0	112	29	15	18	36	1.91
500613--500638	13	2.0	13	100	0	52	38	15	15	30	1.88
500595--500658	33	2.0	32	90	3	101	39	17	14	29	1.88
504005--504043	10	3.8	10	86	6	51	84	0	12	2	0.72
504450--504516	19	3.6	17	75	16	62	73	4	1	20	1.09
504982--505028	20	2.3	20	82	10	60	31	0	0	68	0.90
505000--505033	16	2.1	17	88	5	52	41	0	0	58	0.98
505244--505276	11	2.8	12	86	9	50	60	0	6	33	1.21
505607--505654	3	16.3	3	93	4	80	62	0	0	37	0.95
506867--506977	55	2.0	55	100	0	222	32	3	27	36	1.74
511744--511832	16	5.5	16	77	6	81	52	0	4	42	1.21
511775--511866	16	5.6	16	74	14	62	56	0	3	40	1.15
512006--512095	45	2.0	45	100	0	180	53	4	11	31	1.56
512499--512560	33	1.9	32	83	9	81	50	1	1	46	1.20
512910--512949	2	20.5	2	89	5	64	50	0	2	47	1.14
515403--515463	16	3.9	17	73	25	55	62	0	1	36	1.05
515438--515563	38	3.4	36	76	17	116	53	0	2	44	1.13
515514--515614	28	3.6	28	80	10	109	52	0	1	45	1.12
520083--520137	20	2.8	20	88	0	74	40	16	10	32	1.83
520705--520733	2	14.5	2	100	0	58	51	0	0	48	1.00
524475--524578	55	1.9	53	86	3	145	29	11	20	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526885--526918	17	1.9	17	88	5	50	26	2	2	67	1.19
533601--533815	108	2.0	108	96	0	394	15	10	14	59	1.61
533971--534001	8	4.0	8	95	4	55	9	0	0	90	0.46
535990--536042	25	2.1	25	86	6	72	37	11	22	28	1.89
540919--541008	36	2.5	36	81	3	110	40	5	10	44	1.61
541270--541320	22	2.3	22	75	0	57	68	7	9	13	1.38
546478--546894	166	2.5	166	86	7	546	29	10	8	51	1.66
547117--547148	15	2.2	15	94	5	57	28	12	0	59	1.34
547527--547559	14	2.5	14	90	9	52	87	0	12	0	0.53
548819--549144	150	2.1	154	81	6	369	22	17	20	39	1.92
551589--551624	16	2.2	16	90	0	54	58	0	13	27	1.36
551929--551981	2	26.5	2	100	0	106	50	0	0	49	1.00
552019--552043	2	12.5	2	100	0	50	52	0	0	48	1.00
555522--555644	55	2.2	55	97	0	228	30	18	8	42	1.81
557489--557527	13	3.0	13	88	0	51	38	10	12	38	1.78
562026--562074	3	16.3	3	95	0	89	30	34	0	34	1.58
563386--563450	33	2.0	33	85	11	89	30	16	15	36	1.90
563480--563533	19	2.8	19	91	2	81	35	18	16	29	1.93
563479--563550	20	3.7	19	86	3	90	36	16	16	30	1.91
563501--563550	19	2.6	19	90	3	73	40	14	16	30	1.87
573104--573165	33	1.9	32	87	9	90	27	12	16	43	1.84
573135--573189	19	2.8	20	91	2	85	30	14	18	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573221--573271	20	2.5	20	87	6	68	35	13	17	33	1.89
579373--579399	13	2.1	13	100	0	54	29	14	14	40	1.86
581275--581316	22	1.9	22	90	0	66	35	4	35	23	1.76
581282--581330	22	2.2	22	88	0	71	34	2	34	28	1.69
581862--581914	19	2.7	21	88	8	76	26	15	16	41	1.88
582812--582992	80	2.3	79	81	4	195	28	24	12	34	1.91
586596--586638	17	2.5	17	84	0	50	58	0	2	39	1.11
589812--589843	2	16.5	2	93	6	57	53	0	0	46	1.00
589843--589875	2	16.5	2	100	0	66	51	0	48	0	1.00
590975--591035	22	2.9	22	73	20	58	54	3	1	40	1.27
592452--592506	22	2.5	21	75	21	58	38	0	1	60	1.08
596057--596200	50	2.9	50	87	0	198	45	11	13	29	1.78
601762--601788	3	9.0	3	100	0	54	33	0	0	66	0.92
602743--602796	16	3.4	15	77	10	54	62	0	20	16	1.32
603677--603714	7	5.6	7	87	12	53	0	10	0	89	0.49
603677--603721	11	4.2	11	83	13	58	0	13	0	86	0.57
603677--603715	20	1.9	21	94	5	71	0	10	0	89	0.48

Tables:   1   2   3

The End!