genome.fa.s459.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold459
Parameters: 2 7 7 80 10 50 1000
Length:  425620

Tables:   1   2   3   4   

This is table  3  of  4  ( 363 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275993--276034	22	1.9	22	85	0	57	54	2	0	42	1.13
276361--276390	11	2.6	11	94	5	51	53	0	0	46	1.00
277147--277199	27	2.0	27	85	7	72	35	1	3	58	1.27
277189--277282	32	3.3	27	72	16	71	43	1	0	55	1.06
277189--277268	32	2.5	34	80	10	96	45	0	0	55	0.99
277182--277293	60	1.9	58	80	7	127	43	1	0	54	1.10
277523--277558	2	18.0	2	100	0	72	50	0	0	50	1.00
278016--278102	17	5.1	17	74	12	61	39	0	1	59	1.05
278151--278193	22	2.0	22	90	4	70	51	0	0	48	1.00
280393--280417	2	12.5	2	100	0	50	48	0	0	52	1.00
282892--282939	8	5.5	8	81	13	51	64	0	2	33	1.05
282893--282944	18	2.9	18	81	15	63	67	0	1	30	1.02
283527--283571	21	2.1	22	83	4	56	53	0	0	46	1.00
286517--286542	9	2.9	9	100	0	52	7	11	0	80	0.89
286642--286715	31	2.4	29	79	16	78	32	0	1	66	1.00
286585--287489	490	1.8	500	84	5	1266	36	6	9	48	1.59
288197--288275	17	4.6	17	82	7	72	45	1	0	53	1.08
288222--288286	10	7.2	9	81	10	71	46	0	0	53	1.00
288222--288282	17	3.4	17	86	6	77	45	0	0	54	1.00
288230--288298	20	3.5	20	71	25	58	46	0	0	53	1.00
288214--288348	60	2.3	60	78	14	140	41	0	0	57	1.09
288327--288360	11	3.2	11	83	8	52	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288458--288492	4	9.0	4	87	6	54	77	0	22	0	0.78
288459--288494	16	2.2	17	95	5	65	80	0	19	0	0.71
288524--288593	26	2.7	24	81	14	77	30	1	2	65	1.15
288668--288705	17	2.2	17	86	13	51	47	0	5	47	1.24
294720--294755	18	2.0	18	94	0	63	27	36	0	36	1.57
301115--301186	22	3.4	22	78	19	66	37	0	0	62	0.95
301125--301201	33	2.4	32	82	6	95	38	0	0	61	0.96
301392--301429	20	1.9	20	84	10	51	39	0	10	50	1.37
301697--301769	32	2.5	28	74	21	76	46	4	0	49	1.21
301706--301769	32	2.0	33	87	9	96	45	4	0	50	1.22
301765--301807	20	2.1	21	86	4	61	13	9	13	62	1.53
302683--302820	69	2.0	69	98	0	267	33	13	10	42	1.78
303570--303596	2	13.5	2	100	0	54	48	0	0	51	1.00
303708--303743	14	2.5	14	90	4	54	19	0	0	80	0.71
305167--305202	17	2.1	17	89	0	54	41	0	5	52	1.24
305731--305757	2	13.5	2	100	0	54	48	0	0	51	1.00
306843--306880	2	19.0	2	100	0	76	50	0	0	50	1.00
309960--309988	2	14.5	2	100	0	58	0	51	0	48	1.00
314113--314143	16	1.9	16	93	0	53	9	0	3	87	0.66
315102--315131	15	2.0	15	93	0	51	63	0	0	36	0.95
315949--315976	5	5.6	5	100	0	56	17	0	0	82	0.68
319823--319980	81	1.9	82	94	1	282	32	11	12	43	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323436--323653	34	6.5	34	85	5	282	40	27	7	24	1.82
323434--323653	67	3.3	67	88	1	323	40	27	7	24	1.82
328066--328281	34	6.4	34	82	5	251	40	25	7	26	1.82
328066--328281	101	2.1	101	88	3	319	40	25	7	26	1.82
328066--328281	67	3.2	67	84	2	272	40	25	7	26	1.82
332302--332383	41	2.0	41	92	0	137	37	6	8	47	1.59
333548--333581	2	17.0	2	88	11	52	47	0	2	50	1.16
334204--334228	2	12.5	2	100	0	50	52	0	0	48	1.00
334501--334526	2	13.0	2	100	0	52	50	0	0	50	1.00
334964--335017	17	3.1	19	84	10	71	40	0	0	59	0.98
336664--336691	2	14.0	2	100	0	56	50	0	0	50	1.00
338103--338166	31	2.1	31	88	5	94	45	10	9	34	1.72
339679--339751	27	2.9	26	74	15	82	46	1	0	52	1.09
341416--341458	17	2.5	17	84	3	50	2	9	2	86	0.76
347830--347878	15	3.3	15	80	11	55	32	2	2	63	1.17
351912--351947	2	18.0	2	100	0	72	50	0	0	50	1.00
352081--352145	21	3.0	21	74	20	62	38	0	0	61	0.96
352059--352140	27	2.9	28	80	14	89	40	0	0	59	0.97
352066--352142	5	15.2	5	69	17	52	38	0	0	61	0.96
352063--352145	16	4.9	16	77	14	78	38	0	0	61	0.96
354034--354076	21	2.0	21	90	0	68	51	18	16	13	1.77
359920--360146	72	3.2	72	97	0	418	35	9	22	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360059--360407	174	2.0	174	99	0	689	33	13	22	30	1.93
361638--361676	2	19.5	2	100	0	78	51	0	0	48	1.00
366354--366402	15	3.3	15	80	11	55	32	2	2	63	1.17
367694--367875	34	5.4	34	88	2	251	24	7	26	41	1.81
367694--367875	67	2.7	67	87	0	256	24	7	26	41	1.81
367694--367875	101	1.8	100	90	5	296	24	7	26	41	1.81
368180--368242	19	3.3	19	90	0	90	28	17	19	34	1.94
372308--372491	34	5.5	34	88	1	255	25	7	26	41	1.81
372308--372491	67	2.7	67	88	0	260	25	7	26	41	1.81
372308--372491	101	1.8	100	90	5	300	25	7	26	41	1.81
373102--373145	23	1.9	23	86	9	63	45	2	9	43	1.48
375657--375741	21	4.4	20	73	23	85	37	0	1	61	1.04
375657--375749	5	18.2	5	70	16	66	37	0	1	61	1.03
375654--375752	16	5.9	16	75	13	76	37	0	1	61	1.03
375657--375757	21	4.7	21	73	17	82	37	0	1	60	1.08
377544--377725	89	2.0	89	96	0	337	30	17	17	35	1.93
377723--377765	21	2.0	21	90	0	68	46	23	16	13	1.83
383823--383977	72	2.2	72	89	2	231	35	9	24	30	1.88
386367--386397	12	2.6	12	94	0	53	58	0	0	41	0.98
387045--387137	27	3.6	27	76	4	77	48	17	8	25	1.75
390087--390186	53	1.9	52	82	9	125	50	19	3	28	1.62
390113--390188	27	2.9	27	88	2	118	52	15	3	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391888--392070	34	5.4	34	88	0	260	25	7	26	39	1.83
392375--392437	19	3.3	19	90	0	90	28	17	19	34	1.94
396503--396687	34	5.5	34	88	0	264	25	7	26	40	1.82
399413--399456	18	2.4	19	84	3	54	40	0	4	54	1.21
399434--399498	27	2.4	27	79	7	78	44	0	1	53	1.09
399447--399506	24	2.3	26	86	13	81	38	0	1	60	1.07
399431--399536	34	3.1	35	77	14	96	40	0	0	57	1.11
399463--399536	36	2.1	35	85	7	96	39	1	0	59	1.06
400073--400132	15	4.1	14	79	10	57	38	1	0	60	1.07
400325--400379	19	2.9	18	83	8	65	29	1	1	67	1.11
401542--401573	14	2.2	15	94	5	57	34	0	0	65	0.93
406191--406594	72	5.6	71	85	4	436	40	10	21	28	1.85
406190--406594	144	2.8	142	81	5	501	40	10	20	28	1.86
406154--406594	216	2.0	216	86	3	602	39	11	20	28	1.87
408281--408355	33	2.3	32	75	6	78	42	2	0	54	1.14
408294--408351	15	3.6	17	78	19	63	48	0	0	51	1.00
408309--408381	27	2.7	26	77	12	85	45	0	0	54	0.99
408309--408438	13	10.1	13	70	14	54	48	2	0	49	1.14
408957--409047	45	2.1	43	83	8	112	29	3	2	64	1.21
410008--410052	2	22.5	2	95	0	81	48	0	2	48	1.13
410080--410137	24	2.3	26	88	5	84	32	24	15	27	1.95
410127--410192	27	2.4	27	89	0	96	24	10	18	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414649--414706	26	2.3	26	94	5	102	31	27	13	27	1.94
414696--414761	27	2.4	27	87	0	87	24	12	19	43	1.85
414747--414792	24	1.9	24	91	8	76	23	8	21	45	1.80
415691--415745	15	3.4	16	83	13	69	45	0	0	54	0.99
416324--416378	27	2.0	27	82	0	65	36	0	0	63	0.95
416451--416507	27	2.2	27	80	17	68	61	0	1	36	1.07
416552--416602	19	2.8	18	82	8	59	35	5	3	54	1.43
419695--419723	15	2.0	15	93	6	51	44	0	0	55	0.99
420561--420619	31	1.9	31	89	6	93	27	16	23	32	1.96
423871--423897	3	9.0	3	100	0	54	33	0	33	33	1.58

Tables:   1   2   3   4