genome.fa.s471.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold471
Parameters: 2 7 7 80 10 50 1000
Length:  409746

Tables:   1   2   3   

This is table  3  of  3  ( 292 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349188--349325	51	2.7	51	86	2	188	42	14	11	31	1.82
349361--349433	21	3.5	20	73	14	51	35	16	10	36	1.84
349867--349909	22	2.0	22	95	0	77	32	34	11	20	1.89
356009--356063	20	2.7	21	82	2	67	40	14	16	29	1.88
356088--356144	20	2.8	20	81	5	62	31	12	8	47	1.72
358528--358837	96	3.2	96	85	1	397	29	22	10	37	1.89
358757--358911	69	2.2	70	85	10	203	31	20	8	39	1.82
361990--362368	166	2.3	165	84	5	473	33	11	7	47	1.67
364059--364100	21	2.0	21	95	0	75	50	7	14	28	1.69
364377--364418	21	2.0	21	95	0	75	50	7	14	28	1.69
363964--364921	318	3.0	318	96	0	1736	33	12	14	39	1.84
364688--364736	21	2.3	21	92	0	80	44	6	12	36	1.67
365003--365436	157	2.8	156	74	11	418	26	17	18	36	1.93
365990--366023	9	3.9	9	84	7	52	2	0	8	88	0.62
365991--366024	17	2.0	17	100	0	68	5	0	5	88	0.64
376924--377025	32	3.2	32	88	0	150	35	12	17	34	1.88
376957--377018	19	3.6	19	71	24	73	35	12	17	33	1.88
377351--377521	62	2.8	60	82	7	195	25	30	16	26	1.97
377346--377521	31	5.9	31	81	7	159	24	30	16	28	1.96
377379--377543	31	5.6	30	83	8	153	24	32	15	27	1.95
377610--378112	49	10.0	49	79	6	522	23	24	17	34	1.96
377610--378105	102	4.9	102	90	2	736	22	24	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378854--378915	19	3.6	19	75	24	82	33	12	19	33	1.90
378872--378896	13	1.9	13	100	0	50	36	16	16	32	1.90
378821--378923	32	3.2	32	92	0	170	34	14	17	33	1.90
379248--379396	31	4.9	31	82	8	155	23	31	16	28	1.96
379248--379396	62	2.5	60	81	9	178	23	31	16	28	1.96
379276--379447	31	5.8	30	80	9	151	23	32	15	27	1.95
379307--379480	90	1.9	91	80	10	205	25	31	14	28	1.95
379506--380006	49	9.9	49	77	6	473	24	24	16	34	1.96
379506--380001	102	4.9	102	87	2	691	24	24	17	34	1.96
379555--379949	151	2.6	149	81	5	474	24	24	17	33	1.96
380625--380670	21	2.2	21	84	0	56	34	13	19	32	1.90
380737--380761	13	1.9	13	100	0	50	36	16	16	32	1.90
380718--380788	32	2.2	32	97	0	133	30	12	21	35	1.91
380717--380780	19	3.7	19	76	23	77	31	12	20	35	1.90
389118--389288	31	5.7	30	76	8	125	26	30	15	28	1.96
389118--389281	62	2.7	60	79	6	170	26	30	14	28	1.95
389146--389320	31	6.0	29	79	7	133	24	30	14	30	1.94
389377--389886	49	10.1	49	80	7	558	22	26	18	33	1.96
389386--389881	102	4.9	102	93	1	824	22	26	18	33	1.96
390681--390705	13	1.9	13	100	0	50	32	16	16	36	1.90
392836--392884	27	1.9	25	84	12	64	26	34	16	22	1.95
396644--396702	20	3.0	20	78	11	68	16	8	6	67	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396646--396704	19	3.1	18	77	18	57	18	6	6	67	1.36
399358--399395	20	1.9	20	94	0	67	39	13	21	26	1.89
399433--399570	52	2.7	52	89	2	199	28	15	14	41	1.87
402131--402174	23	1.9	23	81	9	54	40	22	6	29	1.80
402592--402625	13	2.6	13	85	0	50	38	14	11	35	1.83
408463--408487	13	1.9	13	100	0	50	32	16	16	36	1.90
408566--408622	21	2.7	21	94	0	96	35	21	10	33	1.87
408632--408661	15	2.0	15	100	0	60	13	6	0	80	0.91

Tables:   1   2   3

The End!