Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold472
Parameters: 2 7 7 80 10 50 1000
Length:  529027

Tables:   1   2   3   4   

This is table  4  of  4  ( 377 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
504352--504609
90
2.9
87
79
10
270
27
26
9
36
1.87
504382--504541
59
2.7
59
79
11
164
26
28
8
35
1.86
504565--504641
28
2.8
28
80
4
93
35
31
5
28
1.79
504645--505017
30
12.5
30
80
7
368
30
26
13
29
1.95
504649--504998
59
5.9
58
78
10
300
30
26
14
28
1.95
505047--505149
33
3.2
33
86
6
149
32
29
17
21
1.96
509695--509761
33
2.0
33
88
0
98
34
11
13
40
1.81
509715--509739
13
1.9
13
100
0
50
36
16
16
32
1.90
509802--509826
13
1.9
13
100
0
50
32
16
16
36
1.90
509835--509955
52
2.3
52
97
0
224
34
18
18
28
1.94
512995--513058
32
2.0
32
87
0
92
18
34
31
15
1.93
515210--515234
13
1.9
13
100
0
50
32
16
20
32
1.94
521060--521180
52
2.3
52
97
0
224
28
18
18
34
1.94
521060--521200
52
2.7
51
90
4
212
30
17
18
33
1.94
521189--521213
13
1.9
13
100
0
50
36
16
16
32
1.90
521254--521323
33
2.1
33
86
0
95
40
14
10
35
1.79
522386--522441
20
2.8
20
89
2
78
30
12
19
37
1.89

Tables:   1   2   3   4

The End!