genome.fa.s481.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold481
Parameters: 2 7 7 80 10 50 1000
Length:  370912

Tables:   1   2   3   

This is table  3  of  3  ( 321 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264381--264427	2	23.5	2	100	0	94	48	0	0	51	1.00
264819--264853	15	2.3	15	90	9	54	45	0	2	51	1.16
264798--264842	19	2.3	20	84	3	56	44	0	0	55	0.99
266561--266591	2	15.5	2	100	0	62	48	0	0	51	1.00
267876--267917	17	2.6	16	84	3	57	45	2	2	50	1.27
270166--270202	2	18.5	2	100	0	74	51	0	0	48	1.00
271464--271531	16	4.2	16	84	0	100	58	4	0	36	1.18
271433--271489	21	2.7	21	86	8	71	59	5	0	35	1.20
271456--271531	32	2.4	32	86	4	100	59	5	0	35	1.20
275049--275080	15	2.1	16	94	5	57	65	0	6	28	1.16
276350--276411	19	3.1	20	78	19	67	64	0	1	33	1.03
276388--276471	10	8.4	10	72	18	59	57	0	0	42	0.99
276358--276467	20	5.6	19	70	16	73	60	0	0	39	1.03
276599--276683	41	2.0	43	82	15	106	47	1	0	51	1.08
278047--278125	39	2.0	39	100	0	158	22	31	2	43	1.67
279623--279654	15	2.2	15	94	5	57	37	0	0	62	0.95
279903--279947	21	2.1	21	91	4	72	46	4	2	46	1.35
280465--280499	14	2.6	14	90	4	54	34	0	2	62	1.10
284937--284983	3	15.7	3	100	0	94	65	0	0	34	0.93
287942--287984	12	3.5	12	75	6	50	46	2	13	37	1.57
287943--287992	25	2.0	25	96	0	91	48	2	12	38	1.52
289231--289322	18	5.2	18	84	2	96	38	7	10	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289230--289337	18	6.3	16	78	8	54	38	7	10	43	1.67
290901--290935	18	1.9	18	94	0	61	37	14	22	25	1.92
292380--292434	17	3.3	17	76	2	58	36	9	10	43	1.72
292371--292434	33	1.9	33	87	6	94	40	9	9	40	1.70
292421--292457	18	2.1	18	100	0	74	35	21	5	37	1.77
293201--293234	2	17.0	2	100	0	68	50	0	0	50	1.00
295065--295112	24	2.0	24	84	8	62	37	8	0	54	1.31
296996--297036	15	2.7	15	92	0	64	48	21	19	9	1.77
297337--297689	89	4.0	89	85	0	438	36	14	17	31	1.90
297344--297689	178	1.9	178	86	0	485	35	14	17	31	1.90
301049--301096	20	2.4	20	78	0	60	70	10	8	10	1.33
301177--301227	24	2.1	24	82	7	59	66	7	0	25	1.18
301230--301292	30	2.2	29	85	5	83	77	4	1	15	1.01
307659--307694	2	18.0	2	100	0	72	0	50	0	50	1.00
315093--315133	20	2.1	19	86	4	55	39	4	9	46	1.58
316618--316642	11	2.3	11	100	0	50	60	0	0	40	0.97
320321--320345	3	8.3	3	100	0	50	68	0	0	32	0.90
320396--320437	16	2.6	17	81	7	52	30	0	2	66	1.04
320747--320781	12	2.9	12	82	0	52	14	0	5	80	0.89
320890--320931	16	2.6	16	85	11	50	9	9	2	78	1.05
323860--323903	23	1.9	23	90	0	70	38	0	0	61	0.96
324570--324653	33	2.5	33	80	5	107	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324570--324648	8	9.6	8	78	5	50	39	0	1	59	1.06
324571--324648	16	4.8	16	71	9	68	39	0	1	58	1.06
324690--324731	20	2.0	21	86	4	59	57	0	0	42	0.99
325204--325274	23	3.0	23	76	8	63	52	0	1	46	1.09
325284--325335	24	2.2	24	86	6	70	51	0	0	48	1.00
327007--327042	17	2.1	17	89	0	54	0	8	2	88	0.59
328392--328430	17	2.3	17	86	8	53	41	2	0	56	1.13
331805--331848	20	2.2	20	87	4	61	54	0	0	45	0.99
331739--331869	32	4.3	31	73	17	98	50	0	1	48	1.10
331753--331868	58	2.0	59	86	8	166	50	0	0	48	1.06
332710--332753	21	2.1	21	95	0	79	13	34	15	36	1.87
334006--334043	2	19.0	2	100	0	76	0	50	0	50	1.00
334043--334070	2	14.0	2	100	0	56	50	0	0	50	1.00
335089--335121	16	2.1	17	88	11	52	57	0	0	42	0.98
337317--337363	3	15.7	3	100	0	94	34	0	0	65	0.93
339007--339035	14	2.1	14	100	0	58	79	0	6	13	0.93
339369--339411	20	2.0	22	86	8	63	39	0	4	55	1.20
341797--341895	17	5.3	20	65	25	56	53	1	2	43	1.19
342036--342149	19	5.8	19	71	20	74	57	1	0	41	1.09
342075--342137	26	2.5	26	75	12	67	57	1	0	41	1.08
343117--343186	31	2.3	29	81	16	79	42	1	0	55	1.08
344093--344456	191	1.9	191	91	0	602	35	11	9	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347194--347223	2	15.0	2	100	0	60	50	0	0	50	1.00
348703--350227	382	4.0	382	96	1	2812	39	8	12	38	1.75
348703--350227	758	2.0	762	97	1	2860	39	8	12	38	1.75
351102--351133	2	16.0	2	100	0	64	50	0	0	50	1.00
351172--351200	3	9.7	3	100	0	58	34	0	0	65	0.93
351766--351840	27	2.8	27	78	6	89	48	21	4	26	1.68
356247--356347	27	3.9	27	79	3	109	50	21	4	22	1.68
359445--359510	24	2.7	25	77	13	66	59	1	1	37	1.16
360479--360575	19	5.8	17	72	27	84	31	12	17	38	1.87
360481--360580	32	3.1	32	97	0	182	33	12	18	37	1.87
360500--360556	13	3.9	13	76	24	60	35	14	17	33	1.90
360661--360789	52	2.5	52	92	0	222	34	18	18	28	1.95
366316--366364	4	13.2	4	75	16	52	77	0	22	0	0.77
367935--367989	18	2.9	19	74	12	60	38	0	0	61	0.96
367910--368050	74	1.9	73	84	4	185	41	3	0	53	1.23

Tables:   1   2   3

The End!