genome.fa.s483.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold483
Parameters: 2 7 7 80 10 50 1000
Length:  459596

Tables:   1   2   3   

This is table  3  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343768--343888	52	2.3	52	95	0	215	28	17	18	35	1.93
343897--343921	13	1.9	13	100	0	50	36	16	16	32	1.90
343962--344028	33	2.0	33	88	0	98	40	14	11	32	1.83
343984--344008	13	1.9	13	100	0	50	32	16	16	36	1.90
344331--344424	13	7.2	13	76	9	84	45	7	32	13	1.72
344331--344436	26	4.1	26	75	9	99	43	7	34	14	1.73
344352--344433	39	2.1	39	81	0	92	41	7	35	15	1.75
344364--344433	13	5.4	13	78	0	59	40	7	35	17	1.77
344516--344589	27	2.8	26	85	4	103	47	22	5	24	1.72
346743--346826	13	6.5	13	78	5	80	41	7	35	15	1.75
346743--346838	26	3.7	26	77	0	102	39	7	37	15	1.75
346754--346838	39	2.2	39	84	0	107	38	7	37	16	1.76
346743--346838	13	7.4	13	79	0	75	39	7	37	15	1.75
347671--347712	9	4.4	9	88	11	66	19	11	19	50	1.78
347671--347712	20	2.2	18	91	8	66	19	11	19	50	1.78
347868--347920	15	3.1	17	84	15	74	33	11	15	39	1.83
347971--347996	13	2.0	13	100	0	52	30	15	15	38	1.88
350338--350467	51	2.6	50	79	7	147	29	24	10	35	1.89
350401--350653	79	3.2	78	92	2	425	25	28	15	31	1.96
350607--350679	28	2.6	28	93	0	119	21	31	20	26	1.98
350528--350760	107	2.2	107	84	6	294	25	26	15	32	1.96
350637--350812	79	2.2	80	85	2	239	27	25	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350353--350730	158	2.4	163	71	14	381	27	25	12	33	1.92
350449--350812	186	2.0	186	79	6	407	25	26	15	31	1.96
355668--355742	20	3.8	19	82	3	87	34	12	12	41	1.79
355668--355745	40	2.0	39	85	7	104	34	11	12	41	1.80
362414--362512	19	5.9	18	72	26	74	35	13	14	37	1.84
362415--362511	32	3.0	32	86	0	149	35	13	14	37	1.85
362434--362492	13	4.1	13	73	23	55	35	15	13	35	1.87
362553--362578	13	2.0	13	100	0	52	30	15	15	38	1.88
362533--362599	33	2.0	33	88	0	98	25	14	16	43	1.86
365053--365125	27	2.7	27	87	6	94	23	34	21	20	1.97
365108--365278	51	3.3	51	79	4	198	29	25	11	33	1.91
365261--365342	28	2.9	28	79	13	89	24	30	17	28	1.97
370706--370794	1	89.0	1	70	0	52	84	12	2	1	0.78
370708--370793	20	4.4	19	81	15	70	83	12	2	1	0.80
370706--370762	25	2.3	26	87	6	82	84	15	0	0	0.63
370707--370794	35	2.5	35	82	12	101	84	12	2	1	0.78
370707--370794	9	9.7	9	74	14	65	84	12	2	1	0.78
370720--370794	16	4.4	16	79	14	78	85	10	2	1	0.76
371754--372288	55	9.4	55	87	6	578	27	26	19	26	1.99
371814--371901	26	3.3	26	64	14	70	26	30	20	22	1.98
371952--372092	27	5.1	27	58	3	66	26	24	20	27	1.99
372097--372496	215	1.9	214	84	4	536	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372041--372542	275	1.8	269	82	7	645	26	26	18	28	1.98
372336--372564	61	3.8	61	81	6	261	26	25	19	28	1.99
372336--372563	121	1.9	121	84	5	309	26	25	19	28	1.99
372336--372556	60	3.7	58	81	7	219	25	26	19	28	1.98
372551--372652	42	2.4	42	80	8	98	21	24	15	38	1.92
372581--372681	42	2.4	42	83	5	114	14	24	13	46	1.82
372579--372810	120	1.9	119	79	12	253	18	24	14	41	1.88
375907--376038	51	2.6	51	79	4	149	29	21	12	36	1.90
375976--376198	79	2.8	79	88	1	322	28	25	12	33	1.92
376134--376249	51	2.3	51	93	0	196	30	25	10	33	1.89
376232--376302	28	2.5	28	86	6	99	25	28	18	28	1.98
376263--376436	79	2.2	79	86	0	240	27	25	14	33	1.94
378665--378727	32	2.0	32	87	12	94	42	31	12	12	1.81
378644--378730	16	5.4	16	76	0	75	43	32	12	11	1.78
379682--379712	15	2.1	15	93	0	53	38	38	9	12	1.77
379738--379847	16	6.9	16	77	4	96	41	29	15	13	1.85
379738--379861	32	3.8	32	77	5	97	41	30	14	12	1.83
379879--379917	15	2.5	15	88	12	53	53	23	0	23	1.46
381121--381295	70	2.4	73	80	6	178	53	10	1	34	1.45
381386--381450	18	3.6	18	73	17	55	60	3	0	36	1.13
382005--382062	17	3.5	17	70	25	52	53	1	1	43	1.21
391216--391249	2	17.0	2	93	0	59	47	0	2	50	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391682--391716	18	1.9	18	88	0	52	22	42	5	28	1.76
392126--392348	77	2.9	77	97	0	419	34	26	9	30	1.89
395938--395983	22	2.0	23	87	4	67	60	0	0	39	0.97
396084--396117	12	2.8	12	86	0	50	41	0	0	58	0.98
396204--396231	2	14.0	2	100	0	56	50	0	0	50	1.00
397032--397840	407	2.0	405	91	1	1316	28	15	16	39	1.89
399630--399784	77	2.0	77	98	0	301	17	25	16	40	1.90
401505--401534	2	15.0	2	92	0	51	46	0	3	50	1.18
401967--402008	18	2.3	18	87	0	57	21	42	9	26	1.83
402097--402132	12	3.0	12	91	0	54	30	44	0	25	1.54
402893--403173	33	8.2	32	72	12	177	17	16	34	32	1.92
402986--403132	75	1.9	76	81	9	176	17	17	34	31	1.92
402953--403164	108	2.0	108	84	4	284	17	16	33	32	1.92
416474--416499	1	26.0	1	100	0	52	100	0	0	0	0.00
417116--417178	22	3.0	21	84	9	74	42	0	1	55	1.09
417408--417448	16	2.5	17	76	11	50	63	0	0	36	0.95
417813--417879	13	5.3	13	73	18	61	67	1	0	31	1.00
418346--418391	24	2.0	23	82	4	56	60	2	4	32	1.28
418521--418577	26	2.2	26	87	6	80	63	0	0	36	0.95
419098--419131	6	5.5	6	86	6	50	32	14	2	50	1.58
419144--419190	20	2.3	20	85	0	67	42	2	0	55	1.12
419142--419204	33	1.9	33	83	6	83	46	1	0	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419190--419230	17	2.4	18	84	8	50	63	0	4	31	1.15
427191--427438	128	1.9	128	88	0	370	33	11	12	41	1.79
431891--431917	14	1.9	14	100	0	54	62	7	14	14	1.51
437018--437111	46	2.0	46	97	0	179	35	12	13	38	1.83
437965--438237	135	2.0	136	94	0	485	48	14	12	24	1.79
440208--440245	20	1.9	20	94	0	67	39	13	18	28	1.88
440791--441310	28	17.8	29	84	8	659	24	17	30	28	1.97
440791--442327	57	26.6	58	82	8	1759	23	17	29	29	1.97
441236--441460	75	2.9	74	79	15	213	24	17	28	29	1.97
441206--442327	115	9.8	104	75	14	531	23	17	29	29	1.97
441310--442327	29	35.0	29	85	5	1177	23	17	29	29	1.97
442424--442454	15	2.1	15	100	0	62	19	12	41	25	1.87
443161--443762	59	10.1	59	94	0	961	26	20	27	24	1.99
444744--444790	8	5.8	8	80	12	51	0	4	10	85	0.74
444744--444779	15	2.3	16	90	4	56	0	2	11	86	0.68
444745--444782	20	1.9	20	89	10	60	0	2	10	86	0.66
456531--456585	28	1.9	29	88	3	85	36	20	23	20	1.95
456482--456667	79	2.4	79	82	1	212	32	17	27	23	1.96
456619--456690	28	2.6	28	88	0	99	23	19	34	22	1.96
456540--456744	107	1.9	108	81	3	252	29	16	27	26	1.96
456679--457016	52	6.4	51	70	11	225	31	11	25	30	1.92
456620--457018	213	1.9	213	89	5	628	31	12	27	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456833--456907	27	2.7	27	89	6	107	22	18	33	25	1.97

Tables:   1   2   3

The End!