genome.fa.s483.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold483
Parameters: 2 7 7 80 10 50 1000
Length:  459596

Tables:   1   2   3   

This is table  1  of  3  ( 351 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1159--1204	17	2.7	17	86	6	58	54	6	0	39	1.26
11054--11246	97	2.0	98	87	3	280	36	11	20	31	1.89
13616--13647	2	16.0	2	100	0	64	50	0	0	50	1.00
19297--19344	17	2.8	16	84	12	60	25	0	2	72	0.95
19532--19583	23	2.3	23	86	0	68	53	23	13	9	1.68
19649--19990	156	2.2	156	79	8	381	25	16	17	40	1.91
22794--22855	22	2.7	23	77	18	65	75	1	14	8	1.10
22793--22857	26	2.6	24	81	11	78	75	1	15	7	1.10
24511--24710	69	2.9	68	77	10	194	31	9	18	40	1.83
24513--24778	35	7.7	35	75	11	158	31	9	19	39	1.84
24651--24801	36	4.3	36	77	9	132	31	8	19	40	1.82
24976--25028	6	9.3	6	83	8	67	32	1	1	64	1.15
25030--25058	14	2.1	14	100	0	58	86	0	6	6	0.72
33781--33829	20	2.5	20	90	3	73	44	16	10	28	1.80
38225--38266	20	2.2	20	95	4	77	40	4	0	54	1.21
46620--46666	20	2.4	20	86	10	62	68	0	2	29	1.02
51880--51927	21	2.5	20	87	12	73	33	12	27	27	1.92
52818--52888	20	3.5	20	82	0	88	43	14	9	32	1.78
53371--53396	10	2.6	10	100	0	52	7	0	7	84	0.77
55968--56192	78	2.9	77	73	18	178	28	26	12	32	1.93
57708--57753	17	2.7	17	86	6	58	54	6	0	39	1.26
61733--62249	58	9.1	58	73	7	193	47	16	10	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61879--61981	48	2.1	49	83	7	129	47	19	9	23	1.79
61929--62250	116	2.8	116	85	3	411	46	16	11	25	1.81
61925--62249	58	5.7	58	76	6	306	45	17	11	25	1.81
61939--62290	116	3.1	116	83	4	349	47	16	11	25	1.79
65476--65503	14	2.0	14	100	0	56	57	0	0	42	0.99
68800--68991	97	2.0	98	87	2	278	35	11	21	31	1.90
75501--75535	16	2.2	16	89	0	52	42	8	2	45	1.49
77524--77586	25	2.5	25	81	0	81	26	17	23	31	1.97
78336--78410	20	3.8	20	78	0	87	34	13	12	40	1.81
78336--78413	40	2.0	39	87	2	111	34	12	12	39	1.82
79322--79378	22	2.5	24	88	11	100	17	10	8	63	1.51
79331--79385	22	2.6	21	88	5	58	20	9	9	61	1.52
86879--87452	27	21.0	27	90	2	871	23	34	14	27	1.93
86879--87452	82	7.0	81	91	2	880	23	34	14	27	1.93
87435--88100	32	20.8	32	94	0	1100	31	35	18	14	1.91
88627--88702	20	3.8	20	78	0	89	35	13	11	39	1.81
88627--88705	40	2.0	39	87	2	113	35	12	12	39	1.81
89614--89670	22	2.5	24	88	11	100	17	10	8	63	1.51
89623--89677	22	2.6	21	88	5	58	20	9	9	61	1.52
92933--93220	142	2.0	142	89	0	432	25	14	18	41	1.88
102128--102154	13	2.1	13	100	0	54	48	7	0	44	1.31
102132--102196	31	2.1	30	85	2	85	53	4	7	33	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102191--102234	11	3.9	11	87	3	61	63	4	0	31	1.14
102161--102262	22	4.8	21	80	9	100	62	2	5	28	1.33
102228--102272	20	2.3	20	96	3	83	71	0	8	20	1.12
102265--102305	20	2.0	20	85	0	55	68	0	4	26	1.10
102201--102328	15	8.5	15	67	22	56	65	0	5	28	1.20
106443--106473	14	2.1	15	94	5	55	38	0	0	61	0.96
107011--107053	23	1.9	22	85	4	59	74	2	11	11	1.17
107505--107558	10	5.2	10	80	6	63	22	1	1	74	1.02
107499--107558	21	3.0	19	77	15	59	23	1	1	73	1.01
107670--107721	19	2.7	20	85	8	81	50	25	7	17	1.72
109232--109271	21	1.9	21	85	10	55	12	15	5	67	1.38
109231--109277	21	2.2	21	77	7	51	14	14	4	65	1.41
110023--110073	15	3.4	15	84	7	59	43	0	0	56	0.99
110403--110443	18	2.3	18	95	0	73	9	24	14	51	1.72
110878--110953	25	3.1	23	75	16	55	46	1	1	51	1.17
111165--111222	21	2.8	21	75	0	62	51	1	1	44	1.21
111165--111222	15	4.1	15	69	13	50	51	1	1	44	1.21
111548--111580	11	2.8	12	86	9	50	36	0	0	63	0.95
111577--111619	21	2.1	20	86	4	59	67	0	0	32	0.91
112174--112223	22	2.2	23	86	10	68	38	0	2	60	1.09
113862--113917	16	3.7	15	77	15	53	62	3	1	32	1.23
113859--113901	14	3.1	13	78	18	50	60	2	2	34	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118346--118566	108	2.0	109	88	2	327	38	16	24	20	1.92
121927--121961	10	3.4	10	92	4	52	37	0	0	62	0.95
124596--124629	4	8.5	4	93	0	59	76	2	0	20	0.92
125476--125520	20	2.2	20	88	7	65	62	0	4	33	1.15
125824--125859	3	12.0	3	100	0	72	66	0	0	33	0.92
129411--129458	23	2.1	23	84	0	60	6	25	2	66	1.26
131038--131109	36	1.9	38	83	10	96	50	0	0	50	1.00
131872--131902	3	10.3	3	100	0	62	32	0	0	67	0.91
132517--132549	10	3.7	9	84	15	50	45	0	0	54	0.99
132555--132600	18	2.5	18	86	10	58	41	4	0	54	1.20
132801--132844	2	22.0	2	100	0	88	50	0	0	50	1.00
140549--140591	22	2.0	22	85	0	59	67	4	0	27	1.10
141176--141250	35	2.3	31	81	11	78	57	0	1	41	1.07
141990--142045	20	3.1	18	80	16	62	58	1	0	39	1.08
141998--142076	11	7.5	11	77	19	71	58	1	1	39	1.14
141998--142076	10	7.5	10	78	17	81	58	1	1	39	1.14
142427--142459	17	2.0	17	94	5	59	54	0	0	45	0.99
142466--142498	6	5.8	6	86	13	52	33	0	0	66	0.92
142467--142499	16	2.1	16	100	0	66	33	0	0	66	0.92
143101--143135	16	2.3	15	90	5	52	22	2	5	68	1.24
143105--143166	22	2.7	23	80	2	72	32	3	4	59	1.34
144404--144459	9	6.2	9	75	20	55	46	1	0	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144404--144459	17	3.1	17	76	23	53	46	1	0	51	1.11
144633--144678	2	23.0	2	100	0	92	50	0	0	50	1.00
145238--145268	2	15.5	2	93	0	53	48	0	3	48	1.17
145977--146012	19	2.0	17	89	10	54	33	0	0	66	0.92
145972--146046	9	8.2	9	72	19	57	41	0	1	57	1.07
150635--150674	5	8.4	5	82	17	50	62	0	0	37	0.95
150626--150669	19	2.3	20	88	7	65	61	0	0	38	0.96
150620--150694	24	3.0	25	75	14	75	65	0	0	34	0.93
153334--153367	2	17.0	2	100	0	68	50	0	0	50	1.00
153461--153523	23	2.6	24	82	7	65	44	0	0	55	0.99
153462--153517	24	2.2	24	82	17	62	41	0	0	58	0.98
153486--153531	23	2.0	23	82	0	56	47	0	0	52	1.00
153659--153706	23	2.1	23	96	0	87	18	0	10	70	1.15
158646--158737	30	3.0	30	74	13	82	43	0	3	53	1.17
158870--158902	15	2.1	16	88	5	50	36	0	0	63	0.95
158942--159005	22	2.8	24	80	7	78	56	0	0	43	0.99
158954--159030	40	1.9	39	82	15	95	51	0	0	48	1.00
159468--159519	28	2.0	25	88	7	68	25	34	3	36	1.74
160766--160845	23	3.6	22	80	11	101	41	0	0	58	0.98
160783--160856	23	3.7	20	73	16	73	40	0	0	59	0.97
160766--160856	43	2.2	40	86	9	121	42	0	0	57	0.99
160968--161009	19	2.2	20	86	4	59	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
161354--161402	3	16.3	3	100	0	98	32	0	0	67	0.91
164037--164072	18	1.9	19	88	5	56	30	2	5	61	1.33
164987--165029	18	2.4	18	92	0	68	34	30	6	27	1.83
167166--167196	13	2.4	13	94	0	53	41	12	12	32	1.81
167279--167303	13	1.9	13	100	0	50	32	16	16	36	1.90
169615--169664	21	2.4	21	83	9	59	48	0	20	32	1.50
169622--169664	21	2.0	22	86	4	61	51	0	20	27	1.48
175979--176009	13	2.4	13	88	0	53	35	12	16	35	1.87
175960--176024	33	2.0	33	87	6	96	35	18	13	32	1.90
176054--176126	20	3.7	20	85	7	87	41	17	12	28	1.86

Tables:   1   2   3