genome.fa.s493.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold493
Parameters: 2 7 7 80 10 50 1000
Length:  575764

Tables:   1   2   3   

This is table  3  of  3  ( 348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356001--356076	32	2.4	32	97	0	143	32	14	18	34	1.91
356095--356122	13	2.2	13	100	0	56	28	14	17	39	1.89
359187--359300	58	2.0	58	80	3	131	23	28	23	24	2.00
365977--366802	74	11.3	74	75	7	520	24	23	14	36	1.93
366004--366410	217	1.9	217	84	2	548	24	23	14	37	1.92
365966--366802	367	2.3	364	78	5	873	24	23	14	37	1.92
375503--375555	20	2.7	20	87	0	70	30	20	15	33	1.93
375584--375637	19	2.8	20	82	2	74	37	14	18	29	1.91
385795--386046	104	2.4	104	82	5	278	48	14	20	17	1.81
385806--387692	939	2.0	939	99	0	3711	38	15	17	28	1.90
399625--399665	21	2.0	21	85	9	57	39	12	9	39	1.76
399705--399775	20	3.6	19	77	7	70	40	16	12	29	1.86
399745--399881	53	2.6	53	95	1	238	37	17	17	27	1.92
399913--399968	21	2.6	22	94	5	105	26	25	10	37	1.88
400059--400083	13	1.9	13	100	0	50	32	16	20	32	1.94
405859--405913	22	2.5	22	100	0	110	61	9	10	18	1.54
406825--406896	20	3.6	19	75	7	72	40	9	13	36	1.78
406822--406899	40	2.0	39	89	2	120	39	11	12	35	1.80
407461--408470	114	8.8	114	88	4	1329	22	17	31	28	1.97
407461--408469	28	35.0	29	87	5	1354	22	17	31	28	1.97
409698--409761	1	64.0	1	74	0	56	0	1	10	87	0.61
409683--409761	22	3.8	20	80	12	70	2	3	10	83	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409688--409761	14	5.3	13	82	14	78	1	2	10	85	0.77
409698--409761	29	2.2	28	84	10	85	0	1	10	87	0.61
409698--409762	14	4.6	14	87	9	87	0	1	12	86	0.65
419476--419517	22	2.0	22	85	4	59	71	7	7	14	1.29
421421--421564	75	1.9	75	87	2	209	31	14	29	24	1.95
422803--422858	23	2.5	23	97	2	105	62	8	10	17	1.52
423771--423845	20	3.8	20	80	3	80	40	12	13	34	1.81
423768--423845	40	2.0	39	87	2	111	39	12	12	34	1.82
425297--425335	22	1.9	20	85	15	53	41	10	5	43	1.61
442596--442655	11	5.4	10	76	20	57	85	11	1	1	0.76
442597--442655	18	3.4	17	83	6	82	84	11	1	1	0.77
443950--444424	28	16.7	28	81	6	449	29	29	16	24	1.96
443949--444432	141	3.4	139	80	5	506	28	29	16	24	1.97
445447--445571	20	5.7	20	69	18	79	30	11	13	44	1.79
455334--455394	11	5.3	11	80	18	70	85	11	1	1	0.75
455335--455394	18	3.3	18	83	0	84	85	11	1	1	0.76
456689--457163	28	16.7	28	81	6	449	29	29	16	24	1.96
456688--457171	141	3.4	139	80	5	506	28	29	16	24	1.97
458187--458311	20	5.7	20	69	18	79	30	11	13	44	1.79
468077--468137	11	5.3	11	80	18	70	85	11	1	1	0.75
468078--468137	18	3.3	18	83	0	84	85	11	1	1	0.76
469432--469906	28	16.7	28	81	6	449	29	29	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469431--469914	141	3.4	139	80	5	506	28	29	16	24	1.97
470927--471051	20	5.7	20	69	18	79	30	11	13	44	1.79
480812--480871	11	5.4	10	76	20	57	85	11	1	1	0.76
480813--480871	18	3.4	17	83	6	82	84	11	1	1	0.77
482166--482640	28	16.7	28	81	6	449	29	29	16	24	1.96
482165--482648	141	3.4	139	80	5	506	28	29	16	24	1.97
483662--483786	20	5.7	20	69	18	79	30	11	13	44	1.79
486963--487014	19	2.7	19	84	3	59	32	19	11	36	1.87
488677--488716	3	13.3	3	89	0	62	40	0	30	30	1.57
488900--488953	21	2.4	24	78	18	78	57	7	20	14	1.61
488907--488950	21	2.1	21	95	0	79	52	9	20	18	1.72
493209--493233	13	1.9	13	100	0	50	32	20	16	32	1.94
495074--495127	21	2.7	19	85	5	72	37	12	16	33	1.87
495074--495156	19	4.6	19	77	20	88	34	12	18	34	1.87
495115--495139	13	1.9	13	100	0	50	36	16	16	32	1.90
495096--495171	32	2.4	32	95	0	134	32	13	18	35	1.89
504087--504111	13	1.9	13	100	0	50	32	16	16	36	1.90
504067--504131	33	2.0	32	85	11	87	30	16	15	36	1.90
504155--504217	19	3.3	19	82	6	83	33	15	14	36	1.88
514411--514464	20	2.7	19	83	8	63	31	16	14	37	1.89
514449--514500	19	2.7	19	81	3	59	32	21	9	36	1.86
514547--514580	13	2.6	13	90	0	50	32	14	11	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516732--516860	52	2.5	52	86	2	172	44	12	12	31	1.79
521986--522114	52	2.5	52	97	0	240	27	17	18	35	1.94
522676--522955	49	5.8	49	81	6	322	30	18	26	25	1.98
522837--522904	22	3.1	22	62	19	52	29	17	29	23	1.97
522676--522963	92	3.0	97	86	7	394	30	18	26	24	1.98
522972--523621	58	11.3	56	83	7	650	19	15	33	32	1.93
522972--523621	27	22.6	27	79	11	604	19	15	33	32	1.93
522972--523621	228	2.8	227	86	6	821	19	15	33	32	1.93
525069--525166	1	98.0	1	73	0	70	1	3	10	85	0.75
525054--525166	14	8.2	13	79	14	104	0	2	12	84	0.78
525069--525166	22	4.8	20	80	10	110	1	3	10	85	0.75
525054--525168	52	2.2	53	82	14	141	0	2	13	83	0.80
525063--525168	21	5.2	20	80	14	101	0	2	12	83	0.79
538935--539063	52	2.5	52	98	0	249	27	18	17	36	1.93
539072--539096	13	1.9	13	100	0	50	36	16	16	32	1.90
538999--539182	86	2.2	84	82	8	212	31	14	17	36	1.90
539139--539236	19	5.8	18	68	28	72	38	16	10	34	1.82
539136--539234	32	3.1	32	91	1	153	37	17	10	35	1.83
540312--540383	20	3.6	20	74	12	58	36	9	16	37	1.82
540426--540472	20	2.3	21	88	3	69	38	17	8	36	1.80
542941--543007	20	3.6	20	76	19	81	32	13	11	41	1.81
542941--543009	35	2.0	35	94	0	120	33	13	11	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545722--545773	19	2.7	19	84	3	59	32	19	11	36	1.87
547437--547476	3	13.3	3	89	0	62	40	0	30	30	1.57
547660--547713	21	2.4	24	78	18	78	57	7	20	14	1.61
547667--547710	21	2.1	21	95	0	79	52	9	20	18	1.72
551969--551993	13	1.9	13	100	0	50	32	20	16	32	1.94
553834--553887	21	2.7	19	85	5	72	37	12	16	33	1.87
553834--553916	19	4.6	19	77	20	88	34	12	18	34	1.87
553875--553899	13	1.9	13	100	0	50	36	16	16	32	1.90
553856--553931	32	2.4	32	95	0	134	32	13	18	35	1.89
559022--559097	21	3.7	21	82	3	109	28	18	11	40	1.86
559042--559115	20	3.7	20	81	3	103	31	20	13	35	1.91
559022--559115	41	2.3	41	100	0	188	29	19	12	38	1.89
559936--560067	64	2.1	63	97	1	246	34	25	7	33	1.84
560921--560945	13	1.9	13	100	0	50	32	8	16	44	1.76
564708--564783	21	3.7	21	82	3	109	28	18	11	40	1.86
564728--564801	20	3.7	20	81	3	103	31	20	13	35	1.91
564708--564801	41	2.3	41	100	0	188	29	19	12	38	1.89
569761--569785	13	1.9	13	100	0	50	32	16	16	36	1.90
569741--569805	33	2.0	32	85	11	87	30	16	15	36	1.90
569829--569891	19	3.3	19	82	6	83	33	15	14	36	1.88

Tables:   1   2   3

The End!