genome.fa.s495.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold495
Parameters: 2 7 7 80 10 50 1000
Length:  586005

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304091--304123	15	2.3	15	89	5	50	60	3	3	33	1.27
313236--313304	2	34.5	2	100	0	138	49	0	0	50	1.00
314708--314741	2	17.5	2	87	6	52	52	0	0	47	1.00
315385--315472	16	5.6	16	85	5	108	29	0	4	65	1.12
315385--315472	32	2.8	32	87	6	126	29	0	4	65	1.12
315385--315478	48	2.0	47	89	2	143	30	0	4	64	1.12
315381--315479	16	6.2	16	85	2	92	31	0	4	64	1.12
322881--322930	25	2.0	25	88	7	75	22	0	2	76	0.89
323461--323486	13	2.0	13	100	0	52	0	7	0	92	0.39
324232--324282	24	2.1	24	96	0	93	49	0	1	49	1.12
324232--324290	24	2.5	24	91	0	82	49	3	1	45	1.28
329336--329416	28	2.9	27	82	12	101	22	7	23	46	1.76
329483--329528	20	2.3	20	88	0	65	10	50	4	34	1.57
329795--329866	27	2.7	27	78	4	74	31	2	15	50	1.58
331932--331956	13	1.9	13	100	0	50	36	16	16	32	1.90
331912--331977	32	2.0	33	94	2	116	34	12	16	36	1.86
332019--332043	13	1.9	13	100	0	50	32	16	16	36	1.90
334266--334319	27	2.1	26	83	10	67	25	38	16	18	1.92
337710--337748	15	2.6	14	80	11	51	12	12	0	74	1.08
338505--338534	3	10.3	3	92	7	53	70	0	0	30	0.88
338763--338795	13	2.6	13	90	4	50	9	12	6	72	1.26
339192--339366	90	1.9	90	91	0	287	36	20	13	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340448--340484	19	1.9	19	100	0	74	32	10	13	43	1.79
340530--340554	13	1.9	13	100	0	50	32	16	16	36	1.90
346839--346901	21	3.2	21	62	25	55	38	11	9	41	1.73
347073--347146	14	5.3	14	72	18	55	58	1	1	39	1.15
349547--349596	22	2.3	21	80	16	57	20	4	2	74	1.08
351129--351171	13	3.5	12	78	15	52	60	2	0	37	1.10
352979--353027	20	2.5	20	82	0	62	40	4	44	10	1.57
355058--355103	21	2.1	22	88	4	67	19	28	19	32	1.96
357556--357594	20	2.0	20	89	0	60	35	5	46	12	1.65
357675--357745	27	2.6	27	86	6	90	46	18	7	28	1.75
358710--358778	28	2.4	30	81	11	81	39	1	1	57	1.16
358755--358789	18	1.9	18	88	11	54	34	2	0	62	1.10
362211--362259	25	2.0	25	84	8	64	53	0	2	44	1.12
362511--362546	19	1.9	19	88	5	56	41	0	2	55	1.14
363774--364053	149	1.9	149	94	0	497	33	19	16	30	1.94
370335--370382	21	2.3	21	85	10	71	27	31	14	27	1.95
375950--375979	4	7.2	4	92	7	51	73	0	0	26	0.84
376021--376082	16	4.1	15	71	17	56	54	1	1	41	1.19
376771--376812	10	4.2	10	80	19	52	30	0	0	69	0.89
377248--377277	15	1.9	16	93	6	53	36	10	0	53	1.35
378134--378189	21	2.7	21	94	0	94	35	10	17	35	1.85
378221--378310	19	5.1	18	71	22	75	35	12	15	36	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378267--378291	13	1.9	13	100	0	50	36	16	16	32	1.90
378246--378317	32	2.2	32	97	0	135	34	12	16	36	1.87
384731--384802	27	2.6	28	72	14	69	50	16	9	23	1.75
385818--385843	2	13.0	2	100	0	52	50	0	0	50	1.00
387875--387927	21	2.5	21	79	8	63	67	20	0	11	1.21
388357--388427	27	2.6	28	86	6	92	46	25	4	23	1.70
388674--388728	23	2.5	22	77	11	58	29	3	10	56	1.51
391076--391128	18	3.0	18	83	2	63	41	7	0	50	1.30
391080--391127	17	2.7	18	80	6	62	43	6	0	50	1.27
391537--391569	14	2.3	15	94	5	59	63	0	0	36	0.95
404318--404585	133	2.0	133	81	4	308	38	13	18	29	1.89
408966--409017	25	2.1	25	85	7	70	61	1	0	36	1.07
408976--409026	24	2.1	25	89	10	79	62	0	0	37	0.95
408975--409032	24	2.4	23	83	13	73	58	0	0	41	0.98
409759--409806	20	2.4	21	80	13	57	45	2	0	52	1.12
411057--411272	34	6.4	34	86	1	274	25	7	26	40	1.83
411057--411274	67	3.2	67	85	2	294	25	7	26	40	1.82
411573--411635	19	3.3	19	90	0	90	28	17	19	34	1.94
415701--415918	34	6.5	34	87	1	278	25	7	26	40	1.83
415701--415920	67	3.3	67	85	2	298	25	7	26	40	1.82
416387--416487	13	8.5	13	70	20	53	36	0	0	62	1.02
416362--416465	29	3.6	29	79	13	99	31	0	2	65	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416368--416468	22	4.4	22	74	13	80	33	0	2	63	1.10
416386--416465	14	5.5	14	77	15	65	33	0	1	65	1.01
416459--416499	19	2.2	18	86	4	55	51	0	0	48	1.00
416506--416552	24	2.0	24	83	8	60	59	4	0	36	1.17
416893--416937	23	2.0	21	91	8	72	42	0	0	57	0.98
416893--416937	21	2.0	23	84	16	60	42	0	0	57	0.98
417346--417391	20	2.2	21	84	7	67	32	21	8	36	1.84
417353--417404	20	2.5	20	81	3	59	36	23	5	34	1.79
418469--418987	257	2.0	257	93	0	887	34	12	11	40	1.80
423493--423545	2	26.5	2	88	0	79	43	0	0	56	0.99
423753--423809	29	2.0	29	86	6	80	56	0	0	43	0.99
423596--424124	271	2.0	269	87	2	756	45	5	10	39	1.60
424898--424971	37	2.0	37	100	0	148	29	5	10	54	1.57
424900--424961	20	3.2	20	64	13	58	29	3	11	56	1.50
431575--431638	29	2.2	29	91	0	101	51	0	0	48	1.00
431578--431635	13	4.1	14	79	14	66	50	0	0	50	1.00
431575--431650	29	2.6	29	85	6	100	50	0	0	50	1.00
431874--431933	10	5.4	12	71	16	58	46	0	0	53	1.00
431874--431933	6	10.8	6	76	16	58	46	0	0	53	1.00
432446--432488	18	2.4	18	80	7	52	37	2	2	58	1.24
433613--433654	21	2.0	20	82	13	50	38	0	2	59	1.10
435680--435788	44	2.4	47	75	7	118	42	0	0	56	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435684--435745	29	2.2	28	80	16	74	38	0	0	61	0.96
435688--435735	24	2.0	24	84	8	62	39	0	0	60	0.97
435697--435741	24	1.9	23	81	4	54	42	0	0	57	0.98
435710--435792	33	2.6	32	80	12	100	40	1	0	57	1.06
435691--435789	18	5.9	18	72	23	74	42	1	0	56	1.06
435681--435791	15	7.4	15	68	22	56	40	0	0	58	1.04
435699--435794	32	3.0	32	77	17	101	41	1	0	57	1.06
436118--436218	18	5.4	18	68	18	55	61	0	2	35	1.11
437038--437102	21	2.9	21	77	13	60	41	0	1	56	1.08
437067--437096	13	2.4	13	94	5	53	40	0	0	60	0.97
437752--437793	15	2.6	16	85	7	50	54	0	0	45	0.99
437770--437825	23	2.3	24	87	6	78	55	0	0	44	0.99
437770--437819	27	1.9	25	88	8	73	54	0	0	46	1.00
437839--437872	17	2.0	17	88	0	50	70	5	0	23	1.09
437843--437902	23	2.7	23	82	14	72	66	3	0	30	1.07
438888--438944	23	2.6	23	83	8	66	3	19	0	77	0.92
439078--439121	22	2.0	22	82	8	54	68	4	2	25	1.20
439294--439380	35	2.6	32	81	15	88	65	0	0	34	0.93
439294--439396	33	3.1	33	80	8	102	63	0	0	35	1.01
439399--439437	4	10.0	4	83	5	53	0	23	0	76	0.78
439632--439698	29	2.3	29	77	7	73	37	1	1	59	1.16
440689--440814	29	4.4	28	70	12	94	39	5	1	53	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440856--440900	15	3.1	15	80	6	65	66	0	0	33	0.92
440857--440899	14	2.9	15	82	6	61	69	0	0	30	0.88
441047--441074	14	2.0	14	100	0	56	50	7	0	42	1.30
442811--442842	17	1.9	17	93	6	57	50	3	0	46	1.17
442798--442881	19	4.6	18	74	14	73	42	1	0	55	1.07
442834--442965	62	2.2	60	80	10	144	36	2	0	60	1.15
442864--442915	22	2.4	21	75	15	52	34	3	0	61	1.14
442907--442955	20	2.4	20	80	12	55	36	2	2	59	1.21
443219--443251	17	1.9	17	93	0	57	30	0	0	69	0.88
445292--445321	13	2.3	13	100	0	60	23	0	16	60	1.36

Tables:   1   2   3   4   5