genome.fa.s499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold499
Parameters: 2 7 7 80 10 50 1000
Length:  498087

Tables:   1   2   3   4   

This is table  1  of  4  ( 448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2714--2829	61	1.9	61	82	3	144	39	6	6	48	1.53
8187--8259	16	4.6	16	75	8	60	41	2	0	56	1.14
8226--8274	25	2.0	25	87	0	71	36	6	0	57	1.24
8189--8255	34	2.0	34	85	5	91	43	2	0	53	1.16
14235--14263	2	14.5	2	100	0	58	48	0	0	51	1.00
15439--15672	129	1.8	129	94	0	414	41	15	14	29	1.86
15748--15777	14	2.1	14	93	0	51	30	3	33	33	1.74
15943--16017	18	4.0	18	75	16	64	41	0	4	54	1.19
15943--15973	10	3.1	10	95	0	53	41	0	0	58	0.98
16690--16733	23	1.9	23	86	9	63	50	0	0	50	1.00
18080--18123	23	1.9	23	81	9	54	38	0	2	59	1.10
23466--23535	18	4.1	16	75	15	68	52	1	5	40	1.34
23696--23736	18	2.2	19	86	4	57	65	0	0	34	0.93
23647--23725	35	2.3	32	78	19	81	58	0	1	40	1.06
24275--24325	2	25.5	2	95	0	84	50	0	45	3	1.20
24602--24683	41	2.0	40	81	4	94	54	0	4	40	1.22
24642--24684	19	2.3	19	80	8	52	55	0	0	44	0.99
29186--29221	17	2.1	17	94	0	63	33	13	19	33	1.91
30195--30264	23	3.0	23	67	19	56	21	4	11	62	1.45
30914--30960	16	3.0	16	73	17	53	42	0	0	57	0.98
31161--31220	26	2.3	26	80	11	68	48	3	0	48	1.18
35770--36301	126	4.2	127	83	2	550	11	27	19	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35771--36305	42	12.6	42	77	3	498	11	27	19	41	1.86
36868--36902	15	2.4	15	95	4	63	17	20	5	57	1.60
36950--37035	5	17.2	5	83	0	82	23	20	8	47	1.77
36950--37045	15	6.9	15	82	13	107	22	20	8	47	1.77
36950--37035	20	4.6	20	80	14	101	23	20	8	47	1.77
38203--38254	14	3.9	14	80	10	72	30	7	0	61	1.24
38205--38256	26	2.0	26	96	0	95	30	9	0	59	1.29
38660--38714	23	2.4	23	84	6	67	43	10	7	38	1.68
38676--38722	23	2.0	23	100	0	94	42	12	4	40	1.63
39286--39318	3	11.0	3	100	0	66	33	0	0	66	0.92
41060--41142	14	5.6	15	71	12	64	49	0	0	50	1.00
41060--41146	30	2.9	29	83	10	86	49	0	0	50	1.00
41489--41527	19	2.1	18	85	4	51	41	0	0	58	0.98
41649--41695	25	1.9	24	86	4	67	59	10	6	23	1.53
42760--42793	2	17.0	2	100	0	68	50	0	0	50	1.00
45960--45990	2	15.5	2	100	0	62	51	0	0	48	1.00
46339--46402	15	4.3	15	76	5	51	64	6	21	7	1.43
49877--49981	14	7.4	14	90	4	156	50	14	0	35	1.43
49877--49981	10	10.5	10	75	15	101	50	14	0	35	1.43
49877--49981	4	26.2	4	82	0	75	50	14	0	35	1.43
51432--51502	30	2.4	30	88	4	99	39	18	1	40	1.59
57278--57316	18	2.2	17	86	13	53	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57251--57321	31	2.2	34	75	12	78	42	0	5	52	1.25
57293--57334	17	2.5	17	84	3	50	47	0	0	52	1.00
57681--57722	14	3.1	14	79	3	50	50	0	9	40	1.35
57842--57920	17	4.6	17	73	7	61	56	1	1	40	1.15
58075--58110	2	18.0	2	100	0	72	50	0	0	50	1.00
58229--58291	26	2.5	25	72	10	65	36	0	6	57	1.24
59935--59979	20	2.2	21	88	4	65	28	13	0	57	1.36
66881--66934	27	1.9	29	88	7	85	53	0	0	46	1.00
67257--67334	15	5.0	16	70	27	53	56	0	2	41	1.13
68326--68370	23	2.0	23	82	8	56	37	0	0	62	0.96
68540--68629	48	1.9	47	82	6	112	33	18	0	47	1.49
69629--69672	18	2.2	22	84	15	60	31	4	0	63	1.14
69985--70037	22	2.3	23	80	3	63	71	5	1	20	1.16
69983--70037	11	4.8	12	72	19	55	70	5	1	21	1.16
70014--70090	15	5.0	15	73	20	52	61	1	1	36	1.13
70059--70110	25	2.2	25	86	6	72	51	1	0	46	1.12
70139--70186	16	2.9	17	79	14	57	50	4	0	45	1.21
70091--70159	27	2.5	26	80	15	77	52	7	0	40	1.29
70682--70706	3	8.3	3	100	0	50	32	0	0	68	0.90
71342--71388	23	2.0	23	83	0	58	38	2	2	57	1.23
71374--71432	19	2.8	22	75	17	70	49	0	0	50	1.00
71357--71435	23	3.7	20	77	17	79	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71352--71444	20	4.4	21	76	19	88	43	0	0	56	0.99
72088--72134	20	2.4	20	82	10	62	42	0	2	55	1.12
72179--72240	20	3.1	20	73	17	58	58	0	0	41	0.98
72213--72259	24	2.0	24	83	8	60	65	2	0	31	1.04
72620--72666	12	4.0	12	89	10	71	65	0	0	34	0.93
72644--72684	17	2.4	18	80	12	50	58	0	2	39	1.11
72621--72722	52	2.0	52	81	11	120	58	0	0	40	1.04
72708--72757	18	2.9	17	83	16	59	58	2	0	40	1.10
77129--77165	16	2.4	16	86	13	51	54	8	2	35	1.44
79274--79298	12	2.1	12	100	0	50	0	8	0	92	0.40
79610--79686	9	7.7	9	76	18	64	57	0	0	42	0.99
79614--79686	21	3.5	20	75	17	62	56	0	0	43	0.99
79646--79691	23	2.0	21	88	12	65	56	0	0	43	0.99
79583--79700	32	3.8	32	84	8	136	55	0	0	44	1.05
79590--79697	22	5.1	22	71	24	72	55	0	0	43	1.06
79611--79705	16	6.1	16	71	4	61	54	0	0	45	0.99
79726--79856	70	1.9	70	81	10	162	45	0	0	53	1.11
79815--79873	21	2.7	22	79	10	59	47	0	0	52	1.00
79905--79936	2	17.0	2	87	12	50	50	0	0	50	1.00
79892--79942	8	5.8	9	80	15	54	52	0	1	45	1.12
80343--80421	24	3.4	24	69	27	71	55	1	1	41	1.16
81950--82002	28	1.9	27	84	3	70	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82842--82891	22	2.4	21	86	6	66	56	2	2	40	1.22
83057--83147	22	3.9	22	76	13	83	60	0	0	39	0.97
83046--83096	22	2.5	19	79	17	57	60	0	0	39	0.97
83085--83138	18	2.8	19	83	8	65	57	0	0	42	0.98
83041--83148	26	4.4	25	74	17	86	58	0	0	41	0.98
84354--84435	42	2.0	41	84	15	107	52	3	0	43	1.18
86366--86538	82	2.1	83	84	7	228	20	15	18	45	1.85
91076--91100	7	3.6	7	100	0	50	84	0	16	0	0.63
91476--91528	4	12.5	4	76	11	52	67	0	0	32	0.91
91476--91531	22	2.6	22	80	8	62	66	0	0	33	0.92
91504--91528	13	1.9	13	100	0	50	64	0	0	36	0.94
91865--91907	12	3.7	12	84	15	63	67	0	0	32	0.91
91903--91957	15	3.6	15	80	2	56	58	0	5	36	1.21
91865--91913	23	2.3	20	86	10	62	67	0	0	32	0.91
92009--92041	15	2.1	16	88	5	50	45	0	0	54	0.99
91994--92082	41	2.2	39	77	15	90	41	2	2	53	1.25
92395--92489	33	2.9	33	73	16	81	62	4	1	32	1.22
92682--92719	3	12.7	3	100	0	76	68	0	0	31	0.90
92939--92968	2	15.0	2	100	0	60	50	0	0	50	1.00
93942--94015	19	3.6	19	72	15	67	64	0	1	33	1.02
93933--94015	25	3.1	26	79	20	84	63	0	1	34	1.02
95719--95770	27	1.9	27	84	7	70	36	0	5	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95997--96029	12	2.5	13	90	9	50	72	0	3	24	0.98
104819--104884	36	1.9	33	82	11	80	37	9	12	40	1.74
104974--105022	26	1.9	25	83	4	62	57	0	4	38	1.18
106850--106891	18	2.4	17	81	14	50	50	0	2	47	1.14
107202--107249	20	2.3	20	96	3	87	56	4	4	35	1.38
108321--108390	25	2.8	24	74	8	68	60	0	0	40	0.97
111198--111238	13	3.1	14	80	16	52	34	0	0	65	0.93
118972--119047	32	2.4	32	84	0	98	38	5	11	44	1.64
118978--119031	2	27.0	2	84	0	72	46	3	3	46	1.38
124991--125063	35	2.1	35	97	0	137	21	16	5	56	1.61

Tables:   1   2   3   4