genome.fa.s499.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold499
Parameters: 2 7 7 80 10 50 1000
Length:  498087

Tables:   1   2   3   4   

This is table  4  of  4  ( 448 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421997--422047	17	3.0	17	80	11	52	70	0	1	27	0.98
424306--424334	10	2.7	11	94	5	51	51	0	13	34	1.42
426548--426623	32	2.5	31	76	6	82	23	14	31	30	1.94
426608--427050	28	15.7	28	85	6	362	23	16	30	29	1.96
426608--427044	56	7.7	56	84	4	513	23	16	30	29	1.96
428419--428521	32	3.3	32	94	2	174	21	17	31	30	1.96
428447--428564	32	3.9	28	85	6	67	22	16	31	30	1.95
429298--429338	21	2.0	21	90	0	64	51	2	0	46	1.14
429333--429366	18	1.9	17	88	5	50	44	2	0	52	1.16
429342--429382	21	2.0	21	90	4	66	43	0	0	56	0.99
429391--429496	13	8.5	12	72	19	74	40	0	4	54	1.21
429391--429464	12	6.0	12	73	17	53	41	0	2	55	1.14
429392--429496	25	4.2	23	74	20	79	40	0	4	55	1.21
429419--429505	38	2.3	36	82	9	93	35	0	4	59	1.18
429577--429608	16	2.1	15	94	5	55	71	0	0	28	0.86
430154--430204	12	4.2	12	84	2	57	56	5	0	37	1.23
430170--430205	2	18.0	2	88	0	54	52	2	0	44	1.15
434926--434980	24	2.3	24	84	6	67	30	1	5	61	1.29
435065--435120	28	2.0	27	83	10	69	51	0	0	48	1.00
435624--435664	5	7.8	5	94	5	64	43	0	0	56	0.99
435622--435664	22	2.0	21	95	4	77	44	0	0	55	0.99
435831--435891	20	3.2	19	81	9	63	45	0	1	52	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436132--436197	19	3.1	23	72	25	65	56	0	0	43	0.99
436724--436761	3	12.7	3	100	0	76	34	0	0	65	0.93
439512--439551	18	2.2	18	86	8	55	50	2	2	45	1.28
450107--450159	22	2.4	22	84	9	72	64	3	1	30	1.22
452500--452540	21	2.0	21	90	0	64	51	4	0	43	1.23
457309--457361	21	2.6	20	82	5	61	50	0	1	47	1.12
457303--457363	27	2.2	27	85	8	79	54	0	1	44	1.10
457553--457772	111	2.0	111	87	8	326	52	1	2	44	1.22
457703--457771	33	2.1	34	86	8	97	50	0	1	47	1.09
461498--461767	88	3.0	89	79	8	237	37	13	6	42	1.70
461701--461835	68	2.0	68	91	2	218	34	14	7	43	1.74
461771--462212	85	5.2	84	74	11	368	38	14	6	41	1.72
461527--462207	249	2.8	237	80	8	670	37	13	6	41	1.71
461856--462168	164	1.9	166	81	5	384	38	13	7	41	1.72
462249--462414	85	1.9	87	83	8	214	38	12	6	42	1.69
463120--463307	46	4.2	46	62	21	108	43	1	0	54	1.13
463098--463457	135	2.7	133	87	8	510	40	2	0	56	1.16
463274--463345	23	3.2	22	73	11	67	43	2	0	54	1.15
463361--463390	12	2.5	12	94	0	51	23	0	0	76	0.78
463133--463497	135	2.8	123	84	9	376	42	1	0	55	1.15
463551--463599	14	3.5	14	81	10	64	55	0	0	44	0.99
464173--464273	39	2.6	39	81	12	102	57	0	0	41	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464175--464273	28	3.5	28	75	8	76	57	0	1	41	1.05
464362--464406	23	2.0	23	82	8	56	48	4	0	46	1.22
464427--464463	3	12.3	3	100	0	74	32	0	0	67	0.91
464707--464783	32	2.4	33	82	8	95	45	3	0	50	1.20
465010--465039	2	15.0	2	100	0	60	50	0	0	50	1.00
465361--465395	16	2.2	16	89	0	52	68	0	0	31	0.90
467260--467311	18	3.1	16	73	13	50	30	0	1	67	1.02
467490--467536	19	2.5	19	83	10	60	63	0	2	34	1.06
467490--467526	20	1.9	20	88	5	58	64	0	2	32	1.07
467532--467574	18	2.4	18	84	3	52	48	0	0	51	1.00
467826--467857	2	16.0	2	100	0	64	50	0	0	50	1.00
471396--471461	30	2.3	29	84	5	80	65	13	6	15	1.45
475321--475383	22	2.7	25	74	18	73	50	0	0	49	1.00
475321--475379	21	2.6	22	78	10	57	52	0	0	47	1.00
475502--475539	2	19.0	2	94	0	58	44	0	5	50	1.24
475839--475896	26	2.2	26	81	6	73	44	0	0	55	0.99
475864--475926	20	3.4	19	68	10	51	47	0	0	52	1.00
475916--475955	22	1.9	20	90	10	62	62	0	0	37	0.95
475963--476008	22	2.0	23	84	12	60	45	2	0	52	1.13
479618--479650	2	16.0	2	93	6	57	48	0	3	48	1.17
484338--484367	4	7.8	4	92	7	53	23	0	0	76	0.78
485043--485104	25	2.5	25	82	12	67	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487117--487384	132	2.0	132	96	0	491	18	32	9	39	1.83
487501--487525	12	2.1	12	100	0	50	0	8	0	92	0.40
488285--488315	8	4.0	8	91	8	55	0	9	0	90	0.46
488287--488315	15	1.9	15	100	0	58	0	6	0	93	0.36
490440--490474	17	2.0	17	88	5	52	65	2	0	31	1.07
490596--490620	3	8.3	3	100	0	50	68	0	0	32	0.90
490726--490768	20	2.2	20	82	0	50	39	0	0	60	0.97
491646--491723	28	2.7	29	82	4	77	64	2	2	30	1.21
491694--491739	20	2.2	20	85	11	58	71	0	2	26	0.97
491696--491765	18	3.6	19	74	12	63	70	1	1	27	1.05
491726--491813	17	5.2	17	76	15	85	69	2	1	27	1.08
491726--491808	18	4.8	18	76	19	79	67	2	1	28	1.11
492134--492168	13	2.6	13	90	4	52	77	0	22	0	0.78
492500--492538	19	2.1	19	85	9	53	35	0	0	64	0.94
492620--492653	10	3.2	10	91	8	50	23	0	0	76	0.79
493491--493517	13	2.1	13	100	0	54	70	7	0	22	1.12
493914--493948	16	2.2	16	89	0	52	45	8	0	45	1.34
493978--494024	16	3.0	16	87	9	62	53	0	4	42	1.20
493978--494016	5	7.4	5	83	11	51	53	0	2	43	1.14
495456--495509	19	2.8	19	80	8	56	37	0	7	55	1.28
496213--496256	2	22.0	2	90	0	70	50	4	0	45	1.22
497826--497868	23	2.0	21	86	9	59	27	0	0	72	0.85

Tables:   1   2   3   4

The End!