Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold500
Parameters: 2 7 7 80 10 50 1000
Length:  2046043

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1137 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1966139--1966206
34
1.9
36
82
11
88
45
5
1
47
1.36
1966342--1966366
3
8.3
3
100
0
50
68
0
0
32
0.90
1968881--1968925
16
2.8
16
83
9
56
57
6
4
31
1.44
1968960--1969004
20
2.3
19
76
3
54
51
6
0
42
1.28
1973635--1973680
2
23.0
2
100
0
92
0
50
0
50
1.00
1980987--1981026
2
20.0
2
100
0
80
50
0
0
50
1.00
1982123--1982152
15
1.9
16
93
6
53
30
16
33
20
1.94
1983066--1983177
56
2.0
56
98
0
215
30
20
5
43
1.74
1984495--1984526
9
3.6
9
95
0
55
87
0
12
0
0.54
1987088--1987145
20
2.9
21
75
17
61
60
0
0
39
0.97
1989061--1989159
16
6.2
16
78
4
101
26
3
15
55
1.54
1990076--1990146
16
4.4
16
78
0
79
26
16
15
40
1.89
1990078--1990146
32
2.2
32
86
0
93
27
15
15
40
1.88
1990075--1990177
16
6.4
16
75
6
75
25
16
19
38
1.92
1990984--1991009
7
3.7
7
100
0
52
42
0
0
57
0.98
1991384--1991661
146
1.9
146
86
0
394
37
5
11
46
1.63
1991663--1991691
14
2.0
15
93
6
51
34
3
6
55
1.44
1997849--1997896
24
2.0
24
100
0
96
37
16
12
33
1.86
1999196--1999265
2
35.0
2
89
0
104
44
1
1
52
1.18
1999516--1999562
19
2.5
20
73
20
55
44
0
0
55
0.99
1999767--2000079
156
2.0
156
99
0
617
28
26
12
32
1.93
2000622--2000651
13
2.4
13
94
5
53
66
0
6
26
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2000718--2000793
5
15.0
5
71
17
50
40
0
0
59
0.98
2000719--2000773
21
2.6
20
88
8
74
41
0
0
58
0.98
2000718--2000788
16
4.6
15
75
3
61
40
0
0
59
0.98
2000719--2000793
19
3.9
19
71
15
66
40
0
0
60
0.97
2000985--2001017
2
16.5
2
100
0
66
51
0
48
0
1.00
2006184--2006443
89
2.9
88
84
4
335
56
5
12
26
1.57
2006409--2006441
17
2.0
17
88
5
50
72
3
12
12
1.23
2010966--2011017
21
2.5
22
84
9
72
38
32
5
23
1.78
2013277--2013363
45
1.9
45
80
0
102
28
1
25
44
1.61
2015024--2015064
21
2.0
21
90
0
64
63
0
36
0
0.95
2015032--2015092
21
3.0
21
83
4
63
75
0
24
0
0.80
2015644--2015686
16
2.7
15
82
10
50
74
0
2
23
0.93
2015922--2016178
111
2.3
110
79
3
275
39
14
13
33
1.85
2018007--2018054
14
3.4
14
79
0
51
29
0
22
47
1.51
2018007--2018054
21
2.3
21
82
13
55
29
0
22
47
1.51
2018177--2018270
45
2.1
45
81
0
107
28
1
25
44
1.61
2019930--2019986
21
2.7
21
86
0
69
70
0
29
0
0.88
2020549--2020591
16
2.7
15
82
10
50
74
0
2
23
0.93
2020871--2021083
111
1.9
111
82
3
268
39
13
12
34
1.82
2021684--2021744
3
20.3
3
93
6
106
68
0
0
31
0.89
2032533--2032632
30
3.2
30
75
9
92
76
9
9
6
1.17
2032542--2032609
30
2.3
30
92
5
111
73
7
10
8
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2032546--2032632
35
2.7
30
79
11
93
74
9
9
6
1.21
2032929--2032956
14
2.0
14
100
0
56
50
14
14
21
1.78
2037605--2037660
28
2.0
29
89
3
87
19
17
7
55
1.65
2041074--2041118
18
2.5
18
100
0
90
24
4
44
26
1.72
2041298--2041348
24
2.1
25
88
3
77
47
3
9
39
1.55
2045018--2045212
7
27.9
7
67
20
61
21
1
33
43
1.62
2045012--2045156
28
5.4
28
71
11
106
23
1
31
44
1.62
2045010--2045212
21
9.7
21
71
17
95
22
1
33
43
1.62
2045059--2046037
7
140.6
7
78
12
695
13
2
44
40
1.55
2045429--2045529
40
2.5
39
82
10
114
3
1
53
40
1.31
2045472--2045532
22
3.1
19
80
17
70
1
0
55
42
1.09
2045419--2045578
15
11.3
15
73
21
98
3
1
55
40
1.26
2045475--2045578
23
4.5
21
79
16
93
2
0
57
39
1.13

Tables:   1   2   3   4   5   6   7   8   9   10

The End!