genome.fa.s500.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold500
Parameters: 2 7 7 80 10 50 1000
Length:  2046043

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1137 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705976--706007	2	16.0	2	100	0	64	50	0	0	50	1.00
707986--708019	18	1.9	18	88	5	52	29	2	0	67	1.05
709214--709241	2	14.0	2	100	0	56	50	0	0	50	1.00
710397--710486	35	2.5	36	80	3	92	52	1	1	45	1.15
710427--710465	21	1.9	19	85	10	51	48	0	0	51	1.00
714966--715029	24	2.6	25	74	16	64	45	0	4	50	1.22
716395--716419	3	8.3	3	100	0	50	64	0	0	36	0.94
716629--716676	6	8.2	6	80	13	55	33	2	0	64	1.05
716629--716676	24	2.0	23	88	4	69	33	2	0	64	1.05
717655--717702	22	2.2	22	85	10	64	37	2	2	58	1.22
719410--719482	12	6.1	12	75	13	53	53	0	0	46	1.00
719405--719459	25	2.1	27	83	6	69	52	0	0	47	1.00
719417--719458	14	3.3	13	84	12	52	54	0	0	45	0.99
721729--721776	21	2.3	21	78	7	53	31	0	0	68	0.90
721721--721798	10	7.4	10	71	16	50	30	2	0	66	1.05
723012--723176	75	2.2	75	92	0	276	36	21	13	27	1.92
723012--723200	75	2.5	75	87	1	245	35	20	16	26	1.94
724399--724424	2	13.0	2	100	0	52	50	0	0	50	1.00
724573--724613	17	2.6	15	85	14	64	46	0	0	53	1.00
724576--724610	17	2.1	17	100	0	70	48	0	0	51	1.00
726841--727076	118	2.0	118	93	0	400	25	16	16	41	1.89
728284--728326	2	21.5	2	86	9	61	48	2	2	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729992--730020	6	4.8	6	100	0	58	34	0	34	31	1.58
730954--730980	3	9.0	3	100	0	54	0	33	0	66	0.92
735078--735112	6	5.5	6	87	12	52	0	20	0	80	0.72
740329--740370	2	21.0	2	100	0	84	50	0	0	50	1.00
740809--740840	16	2.0	17	88	11	50	37	0	0	62	0.95
740894--740963	28	2.5	28	80	15	81	34	0	0	65	0.93
740894--740963	8	7.9	9	69	24	51	34	0	0	65	0.93
740900--740963	17	3.8	16	73	20	58	32	0	0	67	0.91
745181--745221	14	2.6	16	77	18	50	75	0	0	24	0.80
745628--745668	3	13.7	3	100	0	82	68	0	0	31	0.90
745985--746042	27	2.3	24	83	16	66	29	3	0	67	1.07
749778--749816	2	19.5	2	100	0	78	0	48	0	51	1.00
750745--750774	2	15.0	2	100	0	60	50	0	0	50	1.00
757588--757628	22	1.9	21	85	5	55	43	0	0	56	0.99
757613--757689	14	5.5	14	71	10	59	55	1	0	42	1.07
757627--757686	21	2.9	21	73	14	61	58	1	0	40	1.08
765403--765427	2	12.5	2	100	0	50	48	0	0	52	1.00
766126--766180	12	4.8	12	78	13	53	63	0	0	36	0.95
766126--766175	16	3.1	17	81	16	61	64	0	0	36	0.94
766118--766187	24	2.9	24	79	10	79	62	0	0	37	0.95
766935--766981	20	2.3	20	83	16	62	38	0	0	61	0.96
766971--767059	19	4.8	20	70	21	59	53	0	2	43	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768593--768623	4	7.8	4	100	0	62	25	22	0	51	1.48
770564--770602	14	2.7	15	96	4	71	35	2	0	61	1.10
770579--770623	20	2.1	22	88	8	67	33	0	2	64	1.06
771005--771029	2	12.5	2	100	0	50	48	0	52	0	1.00
771327--771391	21	2.9	21	82	17	62	63	3	0	33	1.10
771338--771392	23	2.3	25	76	20	64	63	3	0	32	1.12
771397--771463	16	4.2	16	74	22	61	50	1	1	46	1.19
771408--771477	15	4.9	15	70	6	56	52	1	1	44	1.18
773998--774030	2	16.5	2	93	0	57	48	3	0	48	1.17
775797--775825	2	14.5	2	100	0	58	51	0	0	48	1.00
776164--776230	25	2.9	23	78	10	75	47	0	0	52	1.00
776149--776253	46	2.2	48	83	11	135	47	0	0	51	1.07
776572--776653	41	2.0	41	95	0	146	40	8	13	37	1.75
777730--777779	26	2.0	24	84	7	64	30	4	4	62	1.32
786623--786669	21	2.2	21	85	7	60	57	4	0	38	1.18
786609--786671	19	3.3	19	77	12	58	55	3	0	41	1.16
786673--786720	25	1.9	25	83	8	62	41	4	0	54	1.20
787148--787237	17	5.1	17	77	14	76	50	1	0	48	1.08
787148--787226	8	9.1	8	75	14	59	51	1	0	46	1.08
787148--787237	18	5.1	19	72	21	70	50	1	0	48	1.08
787453--787479	2	13.5	2	100	0	54	48	0	0	51	1.00
790790--791227	221	2.0	215	83	8	546	22	12	13	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792330--792367	19	2.0	19	89	0	58	18	13	7	60	1.56
796120--796151	5	6.4	5	100	0	64	62	0	0	37	0.95
796501--796535	6	5.7	6	96	3	61	45	0	0	54	0.99
796883--798475	228	7.0	227	80	4	1729	29	24	24	21	1.99
796947--798475	456	3.4	456	97	0	2783	29	24	24	21	1.99
799399--799433	3	11.7	3	100	0	70	31	0	0	68	0.90
800487--800523	2	18.5	2	94	0	65	51	2	0	45	1.15
801495--801534	21	1.9	21	89	0	62	62	0	0	37	0.95
801492--801544	21	2.5	20	82	11	61	62	1	0	35	1.06
806662--806695	2	17.0	2	100	0	68	50	0	0	50	1.00
807028--807090	16	3.9	16	69	23	51	55	3	0	41	1.16
807631--807664	14	2.4	14	90	0	50	41	0	0	58	0.98
808113--808177	34	1.9	34	81	12	80	43	0	0	56	0.99
808293--808352	22	2.8	22	85	7	70	53	1	1	43	1.20
808554--808596	23	1.9	22	85	4	59	62	0	2	34	1.08
809204--809241	2	19.0	2	100	0	76	0	50	0	50	1.00
810139--810175	2	18.5	2	100	0	74	48	0	0	51	1.00
813988--814015	5	5.6	5	100	0	56	82	0	0	17	0.68
813986--814022	15	2.5	15	86	0	56	75	0	8	16	1.02
819423--819483	19	3.4	18	77	20	65	44	0	0	55	0.99
820897--820921	3	8.3	3	100	0	50	0	32	0	68	0.90
822968--822992	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
823262--823351	20	4.7	20	68	20	66	62	2	1	34	1.15
825707--825762	28	2.1	26	83	9	69	55	0	0	44	0.99
825761--825804	13	3.3	14	81	12	56	50	0	0	50	1.00
825766--825810	18	2.5	19	86	13	60	46	0	0	53	1.00
826448--826489	14	2.7	15	79	13	50	54	0	0	45	0.99
826442--826515	15	4.8	16	71	22	61	56	0	0	43	0.99
827516--827542	2	13.5	2	100	0	54	48	0	51	0	1.00
828016--828056	3	13.7	3	100	0	82	31	0	0	68	0.90
828123--828164	20	2.1	20	95	0	75	33	4	16	45	1.69
835573--835613	21	2.0	21	100	0	82	34	4	4	56	1.42
835670--835735	20	3.3	21	78	13	61	62	0	0	37	0.96
835681--835736	20	2.8	20	81	7	62	62	0	0	37	0.95
836743--836768	2	13.0	2	100	0	52	50	0	0	50	1.00
837153--837204	25	2.1	24	82	10	61	48	0	1	50	1.12
838109--838133	5	5.0	5	100	0	50	20	0	0	80	0.72
840772--840805	3	11.3	3	100	0	68	35	0	0	64	0.94
841286--841351	26	2.5	28	83	16	88	53	3	0	43	1.16
841535--841574	6	7.0	6	86	11	57	87	0	12	0	0.54
841535--841574	11	3.5	11	83	6	53	87	0	12	0	0.54
841535--841574	17	2.4	17	91	0	62	87	0	12	0	0.54
847205--847300	49	2.0	49	93	0	165	35	19	15	29	1.93
847222--847298	24	3.2	24	68	17	68	38	18	15	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850726--850771	19	2.5	19	89	10	69	60	0	0	39	0.97
853552--853577	2	13.0	2	100	0	52	50	50	0	0	1.00
857568--857633	17	4.1	17	75	22	54	54	0	0	45	0.99
857611--857665	20	2.7	20	78	13	58	60	0	0	40	0.97
857627--857669	15	2.8	16	89	7	70	60	0	0	39	0.97
857627--857683	26	2.2	26	81	12	64	57	1	0	40	1.09
860002--860076	41	1.9	38	84	10	98	33	2	9	54	1.46
864779--864824	3	15.3	3	100	0	92	67	0	0	32	0.91
865322--865357	15	2.2	16	90	9	56	0	16	5	77	0.94
865602--865641	14	2.9	14	85	7	55	30	0	0	70	0.88

Tables:   1   2   3   4   5   6   7   8   9   10