genome.fa.s502.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold502
Parameters: 2 7 7 80 10 50 1000
Length:  762056

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215730--215758	2	14.5	2	100	0	58	51	0	0	48	1.00
215822--215895	23	3.2	23	66	7	69	41	5	6	45	1.53
218626--218661	11	3.4	11	88	7	56	50	0	0	50	1.00
219121--219171	24	2.1	24	82	7	59	54	9	7	27	1.60
222204--222253	22	2.3	22	86	6	66	54	0	0	46	1.00
222231--222275	24	1.9	23	86	4	63	64	0	0	35	0.94
222255--222282	12	2.3	12	100	0	56	75	0	0	25	0.81
222819--222902	21	3.8	23	73	21	65	52	1	0	46	1.08
222722--222902	26	7.1	25	67	19	70	50	1	1	47	1.15
222862--222939	37	2.1	34	84	11	93	44	2	2	50	1.29
228073--228109	2	18.5	2	94	0	65	54	0	45	0	1.00
232778--232802	4	6.2	4	100	0	50	24	28	0	48	1.52
233358--233415	21	2.7	22	84	10	75	60	0	0	39	0.97
233342--233417	30	2.6	29	84	12	93	60	0	0	39	0.97
233925--233977	27	1.9	28	84	3	72	39	0	1	58	1.09
233941--233976	17	2.0	19	89	10	58	33	0	0	66	0.92
234005--234087	26	3.6	23	71	15	64	40	1	0	57	1.06
234080--234151	31	2.3	30	83	7	81	59	1	0	38	1.06
234265--234325	26	2.3	25	81	13	68	39	1	0	59	1.08
234280--234315	15	2.5	15	90	4	56	38	0	0	61	0.96
234324--234364	16	2.5	17	80	15	50	36	0	2	60	1.10
234288--234389	52	1.9	52	82	5	125	44	0	0	54	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235474--235586	56	2.0	56	100	0	226	12	19	18	49	1.79
237737--237812	38	2.0	38	87	5	109	22	11	15	50	1.77
241779--241817	3	13.0	3	100	0	78	33	33	0	33	1.58
244037--244072	10	3.5	10	88	3	54	38	0	2	58	1.13
244024--244085	12	5.2	12	77	7	56	40	0	1	58	1.08
245398--245451	28	1.9	28	96	0	99	31	37	7	24	1.83
249546--249586	2	21.0	2	90	5	66	48	0	48	2	1.14
249780--249962	95	1.9	95	92	2	305	44	6	1	47	1.37
250704--250770	21	3.2	21	74	14	66	62	2	0	34	1.10
250730--250772	17	2.6	16	76	23	52	69	2	0	27	1.00
250907--250942	19	1.9	19	88	5	56	55	0	0	44	0.99
251437--251480	22	2.0	22	86	4	61	18	2	2	77	0.98
251928--251983	29	2.0	28	82	3	67	55	1	0	42	1.10
252210--252259	27	1.9	25	84	8	64	48	0	2	50	1.12
253065--253105	2	20.5	2	84	0	55	46	2	4	46	1.37
253241--253329	28	3.3	27	74	17	78	53	0	0	46	1.00
255218--255256	13	2.9	13	84	3	51	56	2	0	41	1.13
255952--256004	16	3.4	16	75	15	65	52	0	0	47	1.00
255942--256002	31	1.9	32	90	3	97	55	0	0	44	0.99
255945--256008	20	3.6	19	67	30	52	53	0	0	46	1.00
256017--256070	19	2.8	20	81	16	60	66	0	0	33	0.92
256022--256071	23	2.2	23	85	7	66	66	0	0	34	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256691--256723	2	16.5	2	100	0	66	48	0	0	51	1.00
257984--258252	90	3.0	91	93	0	450	33	18	5	42	1.72
258920--258957	18	2.1	19	90	5	60	47	0	2	50	1.15
258948--259018	26	2.7	25	79	14	72	61	1	2	33	1.19
258951--258996	12	3.6	13	77	13	51	67	0	2	30	1.03
259063--259111	25	2.0	24	84	11	64	42	2	4	51	1.32
259106--259190	33	2.6	32	77	18	86	55	0	0	44	0.99
259264--259354	25	3.6	26	78	14	100	51	0	0	48	1.00
259260--259329	32	2.3	31	82	9	81	47	0	0	52	1.00
259264--259365	51	2.0	50	81	9	118	50	0	0	50	1.00
259670--259713	12	2.9	17	68	31	53	50	0	4	45	1.22
259709--259781	21	3.3	21	83	11	76	54	0	0	45	0.99
259733--259793	26	2.3	27	78	13	65	55	1	0	42	1.09
259762--259795	17	2.0	17	88	0	50	61	2	0	35	1.11
260771--260816	23	2.0	23	87	4	67	56	0	0	43	0.99
267711--267735	2	12.5	2	100	0	50	52	0	0	48	1.00
268747--268772	6	4.3	6	100	0	52	15	0	0	84	0.62
268889--268931	22	2.0	22	86	9	61	62	2	34	0	1.08
273149--273182	2	17.0	2	100	0	68	50	0	0	50	1.00
273454--273519	22	3.0	22	80	6	80	53	3	0	43	1.16
274038--274205	9	19.0	9	66	19	61	51	0	0	48	1.05
274057--274165	56	1.9	57	83	12	145	52	0	0	46	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282836--282908	26	2.6	27	78	10	76	39	2	0	57	1.13
282844--282899	15	4.1	15	71	19	50	44	0	0	55	0.99
283166--283252	21	3.8	24	66	28	62	40	1	0	58	1.05
283174--283212	10	3.8	10	90	6	60	43	0	0	56	0.99
283170--283247	32	2.5	31	79	8	86	38	1	0	60	1.05
283426--283454	2	15.0	2	92	7	51	51	0	0	48	1.00
284005--284041	12	3.2	12	85	7	51	0	35	5	59	1.20
284382--284412	16	2.0	15	93	6	53	16	0	6	77	0.97
284383--284421	15	2.5	16	83	8	53	15	2	10	71	1.23
289491--289554	33	2.0	32	90	6	103	20	12	37	29	1.89
291794--291847	22	2.3	24	75	9	58	53	0	0	46	1.00
294361--294390	3	10.0	3	100	0	60	33	0	0	66	0.92
295093--295144	2	26.0	2	84	7	70	46	1	3	48	1.31
295100--295144	17	2.8	17	90	6	67	46	2	2	48	1.26
295090--295144	19	2.9	19	88	0	83	47	1	3	47	1.30
295093--295144	15	3.7	14	84	7	70	46	1	3	48	1.31
295907--295957	3	17.0	3	100	0	102	33	0	0	66	0.92
296409--296457	18	2.7	18	75	9	55	51	0	0	48	1.00
297740--297790	23	2.2	23	96	0	93	45	3	5	45	1.46
303560--303589	2	15.0	2	92	0	51	50	3	0	46	1.18
309505--309566	29	2.1	29	96	0	115	30	6	8	54	1.55
309563--309629	30	2.2	30	89	0	98	37	16	2	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311293--311352	31	2.0	29	83	6	75	61	1	13	23	1.41
312022--312085	19	3.5	18	79	8	58	51	4	3	40	1.38
312040--312096	15	3.7	15	76	9	53	50	3	1	43	1.29
312088--312144	24	2.3	25	79	11	64	54	7	1	36	1.38
312216--312250	3	11.7	3	93	0	61	62	0	2	34	1.10
321938--321993	23	2.5	23	86	11	80	60	0	0	39	0.97
322989--323042	13	4.1	13	80	15	58	48	0	1	50	1.11
322963--323052	45	2.0	45	82	8	112	51	0	3	45	1.18
323757--323795	2	19.5	2	94	0	69	51	2	0	46	1.14
324043--324086	17	2.7	17	89	6	65	54	0	0	45	0.99
324300--324335	17	2.1	17	94	0	63	58	0	0	41	0.98
329564--329595	2	16.0	2	93	0	55	46	0	3	50	1.17
332073--332158	40	2.2	40	93	0	145	50	3	12	33	1.58
341305--341340	2	18.0	2	94	0	63	47	0	2	50	1.15
342234--342265	2	16.0	2	100	0	64	50	0	0	50	1.00
348603--348653	25	2.0	26	81	11	61	31	3	1	62	1.24
348773--348800	2	14.0	2	100	0	56	50	0	0	50	1.00
350109--350180	2	37.5	2	71	18	55	41	1	4	52	1.29
350389--350460	17	4.0	19	79	16	73	41	1	0	56	1.07
352314--352351	2	19.0	2	100	0	76	50	0	0	50	1.00
352597--352647	10	5.1	10	74	9	50	64	3	0	31	1.11
352593--352629	19	2.0	18	94	5	65	59	2	0	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353096--353126	2	15.5	2	100	0	62	48	0	0	51	1.00
355888--355948	23	2.7	22	89	2	86	50	13	1	34	1.51
357217--357305	31	2.9	31	88	5	128	64	10	1	24	1.32
357640--357724	38	2.2	38	81	10	93	44	1	1	52	1.16
357650--357731	39	2.2	35	77	10	83	47	1	0	51	1.08
361536--361604	33	2.1	33	91	0	111	26	26	11	36	1.90
365442--365780	186	1.8	185	81	5	421	37	21	14	27	1.92
367642--367666	2	12.5	2	100	0	50	48	0	52	0	1.00
372791--372831	18	2.3	18	86	0	55	41	12	43	2	1.55
376054--376109	17	3.3	16	80	9	67	51	0	1	46	1.11

Tables:   1   2   3   4   5   6