genome.fa.s502.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold502
Parameters: 2 7 7 80 10 50 1000
Length:  762056

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 619 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616386--616420	13	2.7	13	90	0	52	60	2	2	34	1.26
617558--617623	17	4.1	17	75	12	61	48	0	1	50	1.10
617764--617796	2	17.0	2	87	6	50	48	0	0	51	1.00
617747--617805	25	2.6	22	78	17	66	50	1	0	47	1.11
618123--618171	14	3.5	13	76	13	53	46	0	0	53	1.00
618117--618161	21	2.0	23	79	12	58	53	0	0	46	1.00
618263--618324	26	2.4	25	78	19	65	37	0	3	59	1.13
618837--618883	20	2.2	23	85	11	64	44	0	0	55	0.99
619892--619930	18	2.2	18	86	9	53	64	7	0	28	1.21
622126--622158	3	11.0	3	100	0	66	66	0	33	0	0.92
627464--627519	28	2.0	28	96	0	103	23	30	10	35	1.89
629139--629184	23	2.0	23	100	0	92	30	17	13	39	1.87
634864--634919	2	28.5	2	96	3	105	50	0	0	50	1.00
640247--640293	17	2.6	18	80	10	51	53	0	0	46	1.00
640806--640844	2	19.0	2	84	5	51	48	0	2	48	1.15
640961--640995	2	17.5	2	100	0	70	51	0	0	48	1.00
642580--642623	14	2.9	14	90	10	61	56	0	0	43	0.99
643691--643717	2	13.5	2	100	0	54	48	0	0	51	1.00
645382--645415	2	17.0	2	100	0	68	50	0	0	50	1.00
645848--645887	17	2.4	17	87	8	55	67	2	0	30	1.04
648241--648473	130	1.8	126	83	10	310	35	9	8	47	1.66
649261--649313	24	2.2	25	82	3	63	37	0	7	54	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649439--649517	32	2.6	31	77	16	85	58	0	0	41	0.98
650042--650103	24	2.6	24	77	7	56	46	0	1	51	1.10
651457--651508	20	2.4	22	84	9	63	63	0	0	36	0.95
652367--652416	16	3.1	16	79	2	55	50	6	8	36	1.57
653282--653323	19	2.2	20	83	12	52	42	0	0	57	0.99
653387--653429	14	3.1	14	75	24	54	55	0	0	44	0.99
655909--655959	13	4.0	13	75	14	52	41	0	0	58	0.98
655980--656012	18	1.9	17	88	11	50	36	0	0	63	0.95
655981--656034	22	2.5	21	73	8	54	38	0	0	61	0.96
656112--656164	19	2.9	17	78	13	52	64	0	0	35	0.94
656106--656165	18	3.2	18	73	17	52	65	0	0	35	0.93
656500--656534	15	2.4	15	90	4	54	42	0	0	57	0.99
656500--656558	29	2.1	28	81	9	66	40	0	0	59	0.97
657186--657211	12	2.2	12	100	0	52	61	0	0	38	0.96
657251--657297	22	2.0	24	84	12	62	29	0	2	68	1.02
657260--657302	22	2.0	22	81	9	52	32	0	2	65	1.06
660312--660362	25	2.0	27	84	7	70	45	7	0	47	1.32
660526--660561	2	18.0	2	100	0	72	50	0	0	50	1.00
662050--662086	2	18.5	2	100	0	74	48	0	0	51	1.00
662294--662343	26	2.0	25	84	4	64	44	6	8	42	1.58
662397--662443	14	3.1	15	84	9	60	55	0	0	44	0.99
662501--662528	13	2.2	13	100	0	56	21	0	39	39	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662625--662671	20	2.4	19	80	16	51	42	0	0	57	0.98
662638--662678	12	3.8	11	84	12	50	43	0	0	56	0.99
668727--668785	20	2.8	20	82	9	73	38	8	11	40	1.72
668730--668801	20	3.5	20	76	14	65	31	11	12	44	1.77
676224--676338	58	2.0	59	87	5	171	46	20	12	20	1.82
677348--677455	33	3.3	33	82	0	126	26	29	12	30	1.93
677437--677590	42	4.0	42	73	20	154	22	27	15	35	1.94
677482--677948	32	14.5	31	73	12	320	28	31	16	22	1.96
677439--677680	74	3.4	74	86	6	315	25	28	16	28	1.97
677556--677948	63	6.2	63	79	5	366	29	32	17	21	1.96
678001--678202	52	3.9	52	77	5	201	24	22	15	37	1.93
678248--678323	39	1.9	39	97	0	143	19	25	18	36	1.94
678295--678533	61	3.9	61	80	2	246	25	24	12	37	1.91
688184--688221	20	1.9	20	94	0	67	31	15	10	42	1.81
692018--692066	24	2.1	23	84	3	62	30	0	2	67	1.02
698749--698788	21	1.9	21	90	10	64	60	0	0	40	0.97
702112--702155	21	2.0	22	83	12	56	38	2	0	59	1.10
702978--703045	33	2.1	33	88	5	102	39	10	5	44	1.63
703084--703114	16	1.9	16	100	0	62	41	12	0	45	1.42
705097--705121	2	12.5	2	100	0	50	52	0	0	48	1.00
705324--705382	17	3.6	17	80	11	70	49	0	0	50	1.00
705582--705705	32	3.6	36	76	15	118	56	4	1	37	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705582--705705	37	3.6	35	76	17	116	56	4	1	37	1.28
706027--706102	15	5.1	15	73	10	66	35	0	2	61	1.10
706062--706113	27	1.9	27	84	0	68	44	0	0	55	0.99
707874--707907	6	6.0	6	93	6	54	82	0	0	17	0.67
707877--707909	16	2.1	16	100	0	66	81	0	0	18	0.68
708487--708513	2	13.5	2	100	0	54	51	0	0	48	1.00
710450--710488	18	2.2	18	85	0	51	51	0	12	35	1.40
710485--710523	2	19.5	2	100	0	78	51	0	0	48	1.00
713808--713996	76	2.5	75	86	3	245	49	5	2	42	1.41
715750--715789	17	2.4	17	86	0	53	25	0	0	75	0.81
716636--716716	35	2.3	33	82	12	99	56	0	1	41	1.07
717036--717068	2	16.5	2	100	0	66	48	0	0	51	1.00
717297--717398	2	56.0	2	70	21	73	45	1	1	50	1.24
717296--717363	27	2.4	27	83	16	77	38	1	2	57	1.23
717295--717387	30	3.0	32	83	6	113	44	1	2	52	1.20
717304--717398	27	3.8	25	74	20	76	45	2	2	50	1.25
717489--717539	19	2.7	20	76	14	54	17	5	3	72	1.20
719638--719671	8	4.1	8	85	7	50	29	0	0	70	0.87
719865--719897	15	2.2	16	89	10	52	66	0	0	33	0.92
720081--720135	13	4.2	13	79	13	60	52	0	0	47	1.00
720097--720130	17	2.0	17	88	0	50	52	0	0	47	1.00
720119--720151	17	1.9	18	88	11	52	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720490--720544	24	2.2	24	83	3	65	52	1	0	45	1.11
720661--720687	1	27.0	1	100	0	54	0	0	0	100	0.00
732753--732904	50	3.0	50	81	5	166	33	9	15	41	1.80
732773--732935	50	3.3	48	81	5	164	34	11	15	38	1.84
737311--737566	50	5.1	50	87	1	334	30	18	17	32	1.95
737314--737566	101	2.5	99	85	3	353	30	18	17	32	1.95
737894--737952	22	2.6	22	82	12	75	52	0	0	47	1.00
738217--738284	19	3.6	19	75	15	70	70	2	1	25	1.09
738217--738270	20	2.7	20	88	8	74	70	3	1	24	1.13
738216--738299	38	2.2	37	83	8	98	69	2	2	26	1.13
738253--738299	10	4.9	10	76	10	53	68	0	4	27	1.08
738216--738305	28	3.2	30	84	10	111	68	2	2	26	1.12
738216--738305	7	12.9	7	75	20	73	68	2	2	26	1.12
738317--738361	19	2.6	17	86	10	56	44	4	0	51	1.21
738588--738619	3	10.7	3	100	0	64	68	0	0	31	0.90
738973--739036	18	3.4	18	75	12	67	71	0	14	14	1.14
739218--739265	21	2.3	22	85	10	73	35	0	0	64	0.94
740096--740140	20	2.3	20	85	11	58	55	0	2	42	1.12
742143--742187	2	22.5	2	100	0	90	48	0	0	51	1.00
744842--744902	30	2.0	30	96	0	113	24	3	18	54	1.58
745757--745806	2	25.5	2	76	11	50	48	0	6	46	1.27
746106--746148	3	14.3	3	100	0	86	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747177--747272	23	4.3	24	68	24	57	57	1	1	40	1.13
747185--747322	14	10.1	14	68	23	57	56	0	1	41	1.13
747225--747322	11	8.2	12	68	18	55	54	1	1	43	1.14
747163--747319	18	7.9	19	67	22	74	56	0	2	40	1.18
747915--747978	32	1.9	34	84	6	87	46	3	0	50	1.17
749545--749624	41	2.0	41	97	0	151	41	5	5	48	1.46
749833--749893	20	3.2	19	76	19	65	50	0	0	49	1.00
749832--749884	9	5.4	10	80	14	58	52	0	0	47	1.00
750078--750124	23	2.1	21	84	7	58	40	4	0	55	1.19
750677--750721	17	2.6	18	86	10	58	64	0	8	26	1.23

Tables:   1   2   3   4   5   6