Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold505
Parameters: 2 7 7 80 10 50 1000
Length:  423124

Tables:   1   2   3   

This is table  1  of  3  ( 315 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1185--1235
25
2.1
25
85
3
68
54
3
0
41
1.19
1552--1587
15
2.3
15
90
4
54
61
2
0
36
1.11
1543--1591
25
2.0
24
84
4
62
61
2
0
36
1.08
4478--4529
25
2.1
25
85
0
68
53
3
0
42
1.19
4237--4896
364
1.8
351
86
4
944
48
6
7
36
1.59
4849--4884
15
2.3
15
90
4
54
61
2
0
36
1.11
4840--4890
25
2.1
24
85
3
66
60
1
0
37
1.08
5483--5669
93
2.0
93
97
0
356
45
13
7
33
1.72
5653--5703
2
25.5
2
87
0
75
50
0
5
43
1.26
7915--7965
25
2.0
26
84
3
68
56
3
0
39
1.18
8281--8316
15
2.3
15
90
4
54
61
2
0
36
1.11
8272--8322
25
2.1
24
85
3
66
60
1
0
37
1.08
11229--11279
25
2.1
25
85
3
68
54
3
0
41
1.19
10989--11638
354
1.8
351
89
1
1030
48
6
8
37
1.59
11591--11626
15
2.3
15
90
4
54
61
2
0
36
1.11
11582--11632
25
2.1
24
85
3
66
60
1
0
37
1.08
15850--15898
17
2.7
17
84
9
53
46
2
0
51
1.12
15850--15912
20
3.3
19
80
15
58
49
1
0
49
1.10
20919--20962
2
22.0
2
100
0
88
50
0
0
50
1.00
21034--21105
29
2.5
29
70
14
69
43
0
0
56
0.99
21072--21115
21
2.0
22
87
12
65
43
0
0
56
0.99
22130--22184
21
2.6
21
80
11
67
49
1
9
40
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25192--25528
177
1.9
180
88
3
511
35
7
7
49
1.58
26639--26681
18
2.5
17
81
11
52
39
0
0
60
0.97
28019--28070
19
2.6
19
80
17
61
26
5
5
61
1.42
28675--28708
6
5.7
6
89
0
50
44
0
2
52
1.16
28926--28969
21
2.0
23
86
8
65
50
6
0
43
1.29
38132--38235
12
8.2
13
68
21
69
63
0
1
33
1.12
38130--38176
17
2.8
17
77
3
51
63
0
0
36
0.94
38138--38245
36
3.0
36
76
12
91
62
0
1
35
1.13
39700--39829
67
1.9
68
92
1
217
53
1
8
36
1.41
39804--39871
35
1.9
35
88
5
102
55
0
1
42
1.08
40017--40051
15
2.3
15
85
0
52
40
0
2
57
1.14
40763--40797
3
11.7
3
87
0
52
34
28
34
2
1.72
41127--41162
19
1.9
18
94
5
63
25
0
5
69
1.10
41298--41334
8
4.8
8
93
6
67
78
0
0
21
0.75
41299--41333
15
2.3
15
100
0
70
77
0
0
22
0.78
42024--42056
2
16.5
2
100
0
66
51
0
0
48
1.00
42897--42930
16
2.1
16
94
0
59
29
8
0
61
1.26
42976--43016
17
2.4
17
83
4
55
34
0
0
65
0.93
42983--43023
18
2.3
18
91
8
66
34
0
0
65
0.93
43011--43056
14
3.1
14
81
6
56
39
0
0
60
0.97
42997--43060
26
2.3
30
82
12
84
40
0
0
59
0.97
42986--43049
17
3.2
20
79
18
62
32
0
0
67
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42993--43056
30
2.1
31
82
11
78
35
0
0
64
0.94
43817--43856
16
2.4
16
83
4
53
30
0
0
70
0.88
48932--48987
21
2.6
22
80
11
62
50
0
3
46
1.19
49049--49073
9
2.8
9
100
0
50
48
0
0
52
1.00
49052--49128
21
3.7
21
68
20
54
46
1
0
51
1.09
49056--49137
16
5.2
16
74
20
68
48
1
0
50
1.08
54841--54883
17
2.5
17
81
7
52
39
30
13
16
1.87
54835--54881
6
8.2
6
79
9
53
36
31
17
14
1.90
55268--55297
3
10.0
3
100
0
60
66
0
0
33
0.92
55948--55989
22
1.9
22
90
0
66
47
4
0
47
1.23
56632--56664
2
16.5
2
100
0
66
51
0
0
48
1.00
56644--56824
92
1.9
92
80
8
206
37
14
13
33
1.86
57200--57252
22
2.5
22
74
22
58
67
3
1
26
1.17
57372--57413
18
2.3
18
88
12
59
47
0
0
52
1.00
60941--60973
13
2.5
13
95
5
57
45
0
30
24
1.53
65231--65321
25
3.5
25
78
10
92
41
3
1
53
1.24
65456--65500
21
2.1
21
87
0
63
35
11
4
48
1.59
65651--65709
29
2.0
30
86
6
84
40
3
15
40
1.64
66494--66522
15
2.0
15
93
6
51
65
0
0
34
0.93
68154--68180
3
9.0
3
100
0
54
0
33
0
66
0.92
69454--69492
2
19.5
2
94
0
69
53
0
46
0
1.00
69758--69817
16
3.8
16
80
8
68
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
70903--70983
27
3.1
26
75
13
78
46
1
0
51
1.08
70959--71052
38
2.4
39
75
16
104
51
1
0
47
1.07
70950--71034
36
2.4
34
74
12
82
47
2
0
50
1.14
72235--72264
9
3.2
9
95
4
51
63
0
0
36
0.95
72917--72954
20
2.0
20
84
5
51
39
0
0
60
0.97
73893--73947
25
2.2
25
90
6
85
0
14
5
80
0.89
74014--74051
16
2.2
18
86
9
53
39
5
10
44
1.61
74426--74454
11
2.7
11
94
5
51
72
0
0
27
0.85
75036--75086
18
2.8
19
74
11
54
47
3
3
45
1.40
75106--75259
82
1.9
83
88
9
235
40
1
11
46
1.47
76049--76086
20
1.9
20
88
0
58
52
0
5
42
1.24
77519--77558
20
2.0
20
85
0
53
62
5
0
32
1.17
78050--78096
23
2.1
22
92
4
76
38
10
8
42
1.70
78473--78536
32
2.0
33
84
3
85
46
4
9
39
1.57
78820--78857
16
2.5
15
84
12
51
47
0
0
52
1.00
78852--78926
31
2.4
32
81
16
79
46
2
0
50
1.15
79594--79630
2
18.5
2
100
0
74
48
0
0
51
1.00
87842--87876
14
2.5
13
90
9
52
57
0
0
42
0.99
88083--88140
25
2.4
25
80
5
66
62
1
0
36
1.06
88465--88494
2
15.0
2
100
0
60
50
0
0
50
1.00
89799--89831
2
16.5
2
100
0
66
48
0
0
51
1.00
91243--91314
33
2.2
33
81
13
96
40
0
2
56
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91810--91840
11
2.8
11
90
0
53
0
9
3
87
0.66
94909--94937
13
2.1
14
93
6
51
44
6
0
48
1.29
95374--95414
5
8.4
5
86
5
57
75
2
0
21
0.92
95374--95414
14
2.9
14
88
3
55
75
2
0
21
0.92
96358--96382
13
1.9
13
100
0
50
68
0
0
32
0.90
96477--96519
14
3.1
14
86
6
61
60
0
0
39
0.97
96480--96519
13
3.0
13
85
3
53
60
0
0
40
0.97
97169--97206
20
1.9
20
88
0
58
65
0
0
34
0.93
97544--97611
6
11.5
6
78
12
70
77
0
20
1
0.84
97932--98024
48
1.9
48
100
0
186
49
21
6
22
1.72
102294--103690
465
2.9
476
84
5
1599
38
9
14
37
1.79
102722--103690
495
2.0
492
84
3
1275
39
9
14
36
1.79
107427--107524
50
2.0
50
97
0
187
32
18
4
44
1.68
108156--108186
14
2.2
14
100
0
62
38
0
0
61
0.96
108468--108517
19
2.6
19
76
17
50
48
6
4
42
1.46
108473--108515
20
2.2
20
84
12
54
55
4
4
34
1.41
108840--108900
31
1.9
32
83
9
81
49
0
6
44
1.28
110293--110401
27
4.0
27
72
19
93
37
0
0
61
1.02
110309--110371
11
5.8
11
74
10
67
34
0
0
65
0.93
110318--110429
8
14.1
8
66
22
58
37
0
2
59
1.11
110317--110427
15
7.0
16
68
20
65
36
0
2
60
1.11
110348--110398
25
2.0
27
88
7
79
43
0
0
56
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110354--110429
32
2.3
34
80
8
86
40
0
3
55
1.18
110425--110474
23
2.1
25
85
7
68
28
2
4
66
1.21
112141--112181
3
14.0
3
94
5
75
34
0
0
65
0.93
112618--112652
17
2.1
17
88
0
52
25
0
5
68
1.11
115546--115612
35
2.0
33
82
11
82
44
5
1
47
1.36
115935--115967
2
16.5
2
100
0
66
48
0
0
51
1.00
117884--117930
16
2.9
16
72
12
51
48
6
8
36
1.59
118780--118832
14
3.9
14
75
9
56
64
0
1
33
1.05
119353--119414
23
2.7
23
80
10
63
46
25
3
24
1.67
123562--123626
24
2.7
23
81
9
67
50
0
1
47
1.10

Tables:   1   2   3