genome.fa.s505.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold505
Parameters: 2 7 7 80 10 50 1000
Length:  423124

Tables:   1   2   3   

This is table  3  of  3  ( 315 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307697--308071	207	1.8	208	84	4	515	28	26	13	31	1.94
308889--308975	20	4.3	20	86	5	122	41	10	16	32	1.82
308889--308979	41	2.2	41	96	1	166	41	9	16	31	1.81
310699--310725	13	2.1	13	100	0	54	29	14	14	40	1.86
319539--319605	34	2.0	34	85	8	93	34	14	19	31	1.92
323655--323729	27	2.9	25	80	15	73	36	2	0	61	1.10
323644--323729	30	3.0	29	80	9	79	36	2	1	60	1.17
323676--323729	14	4.2	13	75	13	58	37	0	0	62	0.95
324700--324724	12	2.1	12	100	0	50	56	0	8	36	1.29
324781--324811	13	2.4	13	94	0	53	41	3	0	54	1.16
325702--325748	16	2.9	16	78	12	60	59	0	0	40	0.97
325972--326030	19	3.0	19	76	16	66	49	0	1	49	1.11
332889--332929	21	2.0	21	85	4	57	4	9	4	80	1.00
340461--340495	2	17.5	2	93	0	61	51	2	0	45	1.16
340883--340923	11	3.5	11	81	12	55	2	19	0	78	0.87
340883--340937	24	2.3	22	77	17	56	9	20	0	70	1.13
341310--341340	1	31.0	1	100	0	62	0	0	0	100	0.00
342024--342129	45	2.2	48	81	6	128	29	21	30	18	1.97
342162--343145	32	31.8	32	88	3	1327	18	18	32	30	1.95
342251--343136	399	2.2	398	99	0	1729	17	18	32	30	1.95
343128--343974	27	31.0	27	93	1	1415	27	14	35	21	1.93
343128--343974	82	10.3	81	93	1	1415	27	14	35	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343128--343974	109	7.8	108	94	1	1415	27	14	35	21	1.93
343938--344026	46	1.9	46	97	0	169	38	11	26	23	1.89
343994--344051	30	1.9	31	89	3	91	32	15	27	24	1.95
351443--351479	2	18.5	2	94	0	65	51	2	0	45	1.15
351863--351903	11	3.5	11	81	12	55	2	19	0	78	0.87
351863--351917	24	2.3	22	77	17	56	9	20	0	70	1.13
352258--352302	22	2.0	22	82	4	54	17	17	15	48	1.81
356255--356292	20	1.9	20	94	0	67	31	15	13	39	1.86
360129--360201	38	1.9	38	83	10	96	67	2	8	21	1.30
362149--362207	19	2.9	19	80	10	55	55	0	0	44	0.99
362156--362214	19	3.1	19	76	11	66	59	0	0	40	0.97
362235--362288	23	2.4	22	81	9	63	42	0	0	57	0.98
362714--362772	29	2.0	31	83	12	79	40	3	5	50	1.41
363746--363773	2	14.0	2	100	0	56	50	0	0	50	1.00
364580--364615	2	18.0	2	100	0	72	50	0	0	50	1.00
365732--365838	21	5.3	19	82	14	92	39	18	30	11	1.86
365730--365767	20	1.9	19	94	5	67	36	21	31	10	1.87
366012--366099	45	2.0	45	97	0	167	32	7	11	47	1.68
367959--368025	24	2.7	23	80	15	64	49	4	2	43	1.38
368943--368982	20	2.0	20	95	0	71	40	12	20	27	1.88
368946--369002	20	2.8	20	86	2	69	36	14	19	29	1.91
369039--369174	50	2.7	50	87	3	202	29	12	13	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377135--377198	25	2.9	21	69	24	51	76	3	3	17	1.04
377471--377504	4	8.5	4	87	12	52	76	0	0	23	0.79
378828--378879	26	2.0	25	85	3	68	51	1	0	46	1.12
379372--380897	456	3.4	451	83	7	1698	27	17	17	37	1.92
380888--380923	2	18.0	2	100	0	72	50	0	0	50	1.00
382823--382889	21	3.2	21	89	0	107	38	19	32	8	1.83
382878--382955	21	3.7	21	96	0	147	44	16	24	14	1.84
382823--382957	42	3.2	41	82	9	148	42	18	27	11	1.84
382834--382956	21	5.9	21	88	1	124	42	18	26	12	1.86
383159--383197	2	19.5	2	100	0	78	48	0	0	51	1.00
386447--386488	13	3.1	14	80	6	52	40	4	0	54	1.21
388700--388730	4	7.8	4	100	0	62	25	0	22	51	1.48
388799--389558	345	2.2	352	77	6	783	26	16	16	40	1.90
389972--390003	2	16.0	2	93	0	55	50	3	0	46	1.17
390815--390914	21	4.6	21	83	9	119	35	20	28	17	1.94
390840--390910	25	3.0	25	82	16	105	35	19	26	18	1.95
391640--391831	96	2.0	94	96	2	357	44	4	5	46	1.45
392837--392885	21	2.2	22	82	10	64	48	0	0	51	1.00
403393--403418	3	8.7	3	100	0	52	30	0	0	69	0.89
405479--405551	38	1.9	38	85	0	101	49	12	10	27	1.74
408551--408633	40	2.0	41	97	2	159	44	15	16	22	1.86
410656--410685	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414813--414849	2	18.5	2	100	0	74	51	0	48	0	1.00
415295--415330	16	2.2	16	90	0	54	44	0	2	52	1.15
415298--415398	26	4.1	24	74	14	91	44	0	2	52	1.16
418117--418212	49	2.0	48	84	11	128	34	1	5	59	1.27
418116--418172	30	2.0	29	86	10	82	35	1	3	59	1.25
418363--418414	26	2.0	25	81	3	59	57	0	0	42	0.98
419433--419473	2	21.0	2	85	5	57	48	2	2	46	1.28
422815--422847	3	11.0	3	100	0	66	33	0	0	66	0.92
422889--422925	13	2.8	13	91	0	56	86	0	13	0	0.57

Tables:   1   2   3

The End!