genome.fa.s506.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold506
Parameters: 2 7 7 80 10 50 1000
Length:  486993

Tables:   1   2   3   

This is table  2  of  3  ( 271 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194289--194314	13	2.0	13	100	0	52	30	15	15	38	1.88
194269--194332	32	2.0	33	90	3	103	28	14	18	39	1.90
194269--194339	19	4.0	18	72	25	62	26	12	21	39	1.89
195904--196047	60	2.4	60	82	1	164	15	15	21	47	1.82
199226--199250	13	1.9	13	100	0	50	36	16	16	32	1.90
206213--206341	52	2.5	52	94	0	231	31	17	17	34	1.92
206213--206361	52	2.9	51	89	4	219	32	16	17	33	1.93
206350--206374	13	1.9	13	100	0	50	36	16	16	32	1.90
206412--206480	32	2.1	33	89	2	104	36	17	11	34	1.86
206436--206460	13	1.9	13	100	0	50	32	16	16	36	1.90
207152--207281	66	2.0	65	83	4	163	17	18	16	47	1.83
207365--207508	41	3.5	40	80	9	155	22	18	12	46	1.82
207407--207564	83	1.9	83	84	5	212	21	20	12	45	1.84
207404--207564	41	3.9	40	77	11	146	22	20	12	44	1.84
207937--208031	41	2.3	42	90	3	147	21	16	14	47	1.82
208752--208969	66	3.3	64	76	7	188	21	19	11	48	1.79
208979--209409	73	5.7	73	70	9	322	23	23	12	41	1.88
209059--209466	41	10.4	41	68	10	219	24	22	12	39	1.89
208985--209504	155	3.4	155	94	0	878	23	21	12	41	1.88
209604--209849	66	3.7	66	79	3	262	18	20	13	47	1.82
209922--210035	41	2.8	40	81	5	131	24	22	8	43	1.81
210249--210394	42	3.6	41	76	10	145	23	19	11	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212483--212603	51	2.3	52	79	8	122	29	14	14	41	1.85
225582--225621	20	2.0	21	85	5	55	45	0	2	52	1.14
225593--225657	23	2.8	23	75	11	62	46	0	1	52	1.10
226059--226094	15	2.4	15	90	0	54	30	0	0	69	0.89
226042--226120	22	3.8	22	68	19	60	35	6	0	58	1.24
227812--227954	51	2.9	51	83	5	186	27	16	11	44	1.81
233003--233045	21	2.0	21	95	0	77	30	6	9	53	1.59
234743--234781	21	1.9	20	85	15	53	53	5	0	41	1.23
238998--239072	20	3.8	19	80	7	78	40	10	16	33	1.82
238948--239134	51	3.9	51	74	17	209	44	10	16	28	1.81
238948--239123	91	1.9	91	91	0	289	44	10	15	29	1.80
238995--239072	40	2.0	39	87	2	111	39	11	15	33	1.83
239860--240004	50	2.9	50	86	3	184	44	9	17	28	1.80
240873--241814	28	32.4	28	78	9	746	23	17	29	28	1.97
240915--241808	292	3.1	287	82	3	1039	22	18	30	29	1.97
241821--241893	26	2.8	26	69	20	71	34	16	15	34	1.90
244239--244307	33	2.1	33	89	5	104	39	15	11	33	1.84
244997--245037	21	1.9	22	85	5	57	24	34	4	36	1.77
252956--252984	14	2.1	14	100	0	58	27	0	37	34	1.57
253223--253285	32	1.9	33	83	3	83	41	11	15	31	1.83
277362--277691	28	11.8	28	84	3	414	28	29	17	25	1.97
283245--283280	18	2.0	18	88	0	54	44	22	5	27	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
284461--284501	22	1.9	22	85	5	57	53	4	2	39	1.35
286211--286266	20	2.9	19	86	5	76	37	16	10	35	1.83
288721--288745	13	1.9	13	100	0	50	32	16	16	36	1.90
288780--288817	20	1.9	20	88	0	58	34	15	7	42	1.76
297016--297071	21	2.7	21	100	0	112	44	10	17	26	1.82
297110--297135	13	2.0	13	100	0	52	38	15	15	30	1.88
299354--299398	21	2.1	21	84	8	56	53	4	20	22	1.63
301201--301231	15	2.1	15	93	0	53	48	16	22	12	1.80
303301--303326	13	2.0	13	100	0	52	30	15	15	38	1.88
305883--305908	13	2.0	13	100	0	52	38	15	15	30	1.88
307544--307607	7	9.4	7	75	13	62	1	15	1	81	0.85
307544--307628	8	10.1	8	72	14	57	1	16	3	78	0.94
307544--307613	13	5.2	12	75	17	59	1	15	1	81	0.84
307544--307614	25	2.8	26	80	16	85	1	15	2	80	0.90
311397--311454	20	2.8	21	78	5	64	37	13	12	36	1.82
312747--312834	32	2.5	33	80	12	97	38	23	11	26	1.89
312765--312831	32	2.0	35	91	8	113	37	23	11	26	1.90
313291--313329	13	3.0	13	84	0	60	35	12	17	33	1.88
313329--313360	10	3.2	10	95	0	55	40	3	28	28	1.71
314513--314539	7	3.9	7	100	0	54	85	0	0	14	0.61
315226--315261	18	2.0	18	94	0	63	41	11	16	30	1.83
316674--316738	21	3.1	21	78	8	62	26	15	6	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316756--316801	21	2.2	21	84	7	58	28	13	2	56	1.48
322758--322815	29	2.0	29	100	0	116	27	10	10	51	1.68
324181--324629	82	5.5	80	74	9	336	33	23	8	34	1.84
324197--324498	163	1.9	161	82	2	381	32	25	7	34	1.84
331230--331259	15	1.9	16	93	6	53	80	0	16	3	0.85
332834--333080	88	2.8	87	82	4	282	23	21	12	42	1.86
333861--333970	56	2.0	56	81	1	132	31	12	21	33	1.91
333888--334039	56	2.8	56	79	5	166	31	12	19	36	1.89
340868--341241	141	2.6	143	86	4	488	42	11	12	33	1.78
342741--343197	166	2.8	160	75	12	383	46	8	14	30	1.74
343588--343634	21	2.2	22	77	11	53	44	14	6	34	1.71
344189--344324	42	3.2	43	73	10	136	47	9	24	19	1.79
344421--344913	47	10.5	47	80	0	468	40	15	21	21	1.91
355300--355404	20	4.7	20	71	22	84	42	9	17	30	1.81
356326--357235	28	31.6	28	81	9	581	23	16	30	29	1.96
356289--356920	121	5.3	119	83	7	734	21	17	29	31	1.96
356867--357227	55	6.6	56	80	8	384	27	14	31	26	1.95
356937--357232	27	11.0	27	84	7	334	27	14	33	25	1.94
365633--365747	52	2.2	52	95	0	203	28	17	18	35	1.93
367220--367287	20	3.3	20	72	22	59	39	11	16	32	1.84
368161--368214	20	2.7	20	91	5	83	37	18	12	31	1.89
369621--369668	21	2.3	20	79	10	53	47	0	22	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369788--369814	13	2.1	13	100	0	54	40	14	14	29	1.86
376077--376103	13	2.1	13	100	0	54	40	14	14	29	1.86
379651--379677	13	2.1	13	100	0	54	29	7	14	48	1.71
379662--379716	19	2.8	19	80	2	65	34	16	9	40	1.80
388214--388343	52	2.5	51	81	7	147	43	10	14	32	1.79
391701--391755	20	2.8	20	77	0	65	41	14	10	32	1.81
392712--392796	32	2.7	32	86	0	116	23	21	25	29	1.99
392755--393312	28	19.6	28	84	4	598	23	17	29	30	1.97
392755--393310	85	6.5	84	83	5	634	23	17	29	30	1.97
405999--406049	27	1.9	26	88	4	75	27	17	33	21	1.96
411862--411922	30	2.0	31	83	6	79	39	21	0	39	1.53
413699--413727	8	3.8	8	90	9	51	75	0	0	24	0.80
413699--413730	15	2.1	15	100	0	64	75	0	0	25	0.81
415467--415542	32	2.4	32	91	4	120	39	15	15	28	1.89
423152--423199	24	2.0	23	88	4	69	8	20	2	68	1.26
423178--423208	13	2.5	12	90	10	53	0	29	0	70	0.87
424007--424041	19	1.9	18	88	11	54	65	5	11	17	1.43
423873--424433	169	3.3	170	90	2	839	53	7	11	27	1.63
425039--425485	28	15.9	27	79	6	392	23	16	27	31	1.96
426801--426850	12	4.2	12	85	7	66	2	0	10	88	0.61
426798--426847	6	8.3	6	82	12	59	2	0	12	86	0.67
426798--426851	21	2.6	21	83	16	76	1	0	12	85	0.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431614--431734	52	2.3	52	94	0	215	28	17	18	35	1.93
431614--431754	52	2.7	52	85	4	187	29	17	19	34	1.94
431743--431767	13	1.9	13	100	0	50	36	16	16	32	1.90
431809--431875	33	2.0	33	85	0	89	40	13	10	35	1.79
434180--434485	79	3.9	79	84	1	382	30	11	28	29	1.92
434419--434535	51	2.3	51	86	4	173	29	10	27	32	1.90
434627--434698	28	2.6	28	93	0	117	25	23	30	20	1.99
434685--434828	51	2.8	51	79	0	180	32	11	24	31	1.91
434471--434749	107	2.6	106	76	8	307	33	16	24	26	1.96
434686--434851	51	3.3	51	76	5	165	31	13	24	29	1.94

Tables:   1   2   3