genome.fa.s506.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold506
Parameters: 2 7 7 80 10 50 1000
Length:  486993

Tables:   1   2   3   

This is table  3  of  3  ( 271 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437123--437213	20	4.6	20	88	0	137	39	16	18	25	1.91
437861--438086	43	5.1	45	73	13	166	41	12	26	19	1.87
437873--438106	88	2.6	89	80	3	258	43	11	26	17	1.84
437939--438101	45	3.6	44	74	14	136	39	12	27	20	1.88
438098--438893	61	13.1	61	83	4	860	25	19	30	24	1.98
438097--438895	121	6.6	121	82	3	847	25	19	30	24	1.98
439909--439943	15	2.3	15	90	5	52	0	11	2	85	0.69
452268--452561	78	3.8	78	79	7	316	31	13	25	28	1.94
452501--452611	47	2.3	47	87	7	152	30	12	26	30	1.93
452654--452884	51	4.5	51	77	6	202	34	12	25	28	1.92
455124--455193	29	2.4	29	92	0	113	35	17	20	27	1.94
459751--459806	19	2.9	19	86	2	76	30	19	14	35	1.91
461441--461480	12	3.5	11	86	10	53	87	5	5	2	0.73
462657--462774	42	2.8	40	74	14	114	20	23	11	44	1.85
462823--462952	31	4.2	31	84	2	172	30	32	27	9	1.88
462836--462977	62	2.3	62	84	4	180	32	34	23	9	1.87
462833--463167	31	10.7	31	74	3	159	30	34	23	11	1.90
463023--463192	62	2.7	62	80	0	178	29	34	22	12	1.92
462829--463224	93	4.2	92	72	6	265	30	34	24	11	1.90
463916--463971	20	2.7	21	80	5	69	39	14	17	28	1.89
464020--464075	20	2.7	21	81	10	62	32	12	8	46	1.73
465099--465204	30	3.5	30	93	1	167	25	20	11	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466126--466185	22	3.0	22	65	25	60	26	13	13	46	1.80
472354--472428	27	2.7	27	83	2	96	30	26	18	24	1.98
472600--472789	33	5.8	32	77	10	163	33	28	15	22	1.94
472613--472789	32	5.5	32	81	4	146	33	28	15	22	1.95
472600--472789	64	2.9	65	81	7	174	33	28	15	22	1.94
473755--473808	20	2.7	20	91	5	83	29	20	16	33	1.95
486408--486724	47	6.8	46	79	6	298	40	17	19	23	1.91
486408--486647	95	2.5	94	85	2	302	41	17	18	22	1.90
486802--486859	30	1.9	30	86	6	82	43	12	18	25	1.85

Tables:   1   2   3

The End!