Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold553
Parameters: 2 7 7 80 10 50 1000
Length:  449280

Tables:   1   2   3   4   

This is table  4  of  4  ( 386 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
412114--412195
27
2.9
28
85
8
87
28
19
29
23
1.98
412127--412195
27
2.5
27
88
6
95
23
21
30
24
1.99
412182--412312
51
2.5
51
82
9
165
32
11
25
30
1.91
414649--414703
20
2.8
20
82
0
74
45
16
14
23
1.84
414723--414790
19
3.9
18
76
23
83
38
14
11
35
1.83
414745--414769
13
1.9
13
100
0
50
32
16
16
36
1.90
414726--414788
32
2.0
32
96
0
117
36
15
12
34
1.86
414846--414902
21
2.7
21
94
0
96
40
19
8
31
1.82
415650--416175
55
9.3
55
85
8
593
23
20
28
27
1.99
417142--417217
17
4.4
17
72
12
57
0
11
5
82
0.81
429797--429879
27
3.0
26
82
12
87
27
18
31
22
1.97
429626--429931
107
2.9
106
81
8
336
29
15
27
27
1.96
429865--429987
51
2.3
54
86
6
164
32
12
23
31
1.91
432334--432388
20
2.8
20
82
0
74
45
16
14
23
1.84
432408--432475
19
3.9
18
76
23
83
38
14
11
35
1.83
432430--432454
13
1.9
13
100
0
50
32
16
16
36
1.90
432411--432473
32
2.0
32
96
0
117
36
15
12
34
1.86
432531--432587
21
2.7
21
94
0
96
40
19
8
31
1.82
435088--435284
84
2.3
84
81
7
229
29
27
12
29
1.93
438318--438343
13
2.0
13
100
0
52
30
15
15
38
1.88
438298--438361
32
2.0
33
90
3
103
28
14
18
39
1.90
438298--438368
19
4.0
18
72
25
62
26
12
21
39
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
440898--440923
13
2.0
13
100
0
52
38
15
15
30
1.88
444835--444879
21
2.1
21
84
8
56
22
20
4
53
1.63
447098--447123
13
2.0
13
100
0
52
30
15
15
38
1.88
447078--447141
32
2.0
33
87
3
94
28
12
18
40
1.87

Tables:   1   2   3   4

The End!