genome.fa.s565.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold565
Parameters: 2 7 7 80 10 50 1000
Length:  391512

Tables:   1   2   3   

This is table  3  of  3  ( 292 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331478--331534	18	3.1	18	76	18	71	35	24	15	24	1.95
331478--331553	38	2.0	38	100	0	152	36	21	15	26	1.93
338503--338527	2	12.5	2	100	0	50	52	0	0	48	1.00
338527--338557	2	15.5	2	100	0	62	51	0	48	0	1.00
338649--338679	2	15.5	2	100	0	62	48	0	0	51	1.00
338871--338899	2	14.5	2	100	0	58	51	0	0	48	1.00
339746--339908	80	2.0	81	89	1	247	26	33	7	32	1.84
341830--341867	18	2.1	19	85	5	51	28	15	13	42	1.85
342877--342915	12	2.8	15	77	22	57	10	12	38	38	1.78
346377--346431	2	28.0	2	88	3	85	52	0	0	47	1.00
348510--348575	35	1.9	33	82	11	80	33	16	1	48	1.56
352110--352234	20	5.7	20	73	18	97	42	11	14	32	1.81
354387--354443	17	3.2	17	82	7	60	45	3	1	49	1.29
354739--354888	76	2.0	76	90	2	239	33	14	18	34	1.90
354753--354916	76	2.2	75	84	6	206	32	13	17	36	1.88
356189--356213	13	1.9	13	100	0	50	32	20	16	32	1.94
356224--356294	24	3.0	24	81	8	81	40	8	23	26	1.83
356294--356332	20	2.0	20	85	5	53	38	17	12	30	1.88
356381--356405	13	1.9	13	100	0	50	36	8	16	40	1.77
360480--360569	29	3.1	27	74	17	83	24	13	14	47	1.80
360472--360757	58	4.9	59	82	5	298	24	12	15	48	1.79
360504--360757	117	2.2	117	81	7	295	24	12	15	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360662--360754	29	3.2	29	74	17	102	23	9	13	52	1.70
360713--360796	39	2.2	39	91	0	132	26	9	14	50	1.73
360761--360851	29	3.1	29	67	22	66	27	13	13	46	1.80
360655--360854	97	2.1	97	84	0	256	25	10	15	49	1.76
360753--360902	58	2.6	58	77	12	164	25	14	14	46	1.82
360621--360902	155	1.8	155	80	3	343	25	12	15	47	1.79
360983--361079	28	3.4	27	67	19	63	24	12	14	48	1.78
360949--361128	57	3.2	56	72	18	158	26	12	13	47	1.79
364615--364686	14	5.2	14	72	14	51	70	0	26	2	1.00
364595--364671	36	2.1	38	83	9	97	67	0	29	2	1.04
364592--364669	18	4.4	17	70	22	61	66	0	30	2	1.05
366596--366639	16	2.6	17	82	7	54	0	27	0	72	0.85
366587--366644	24	2.2	26	77	22	68	0	24	1	74	0.92
366597--366644	24	2.0	24	92	8	80	0	25	0	75	0.81
367183--367223	18	2.3	18	87	4	57	48	2	14	34	1.57
367511--367537	2	13.5	2	100	0	54	51	0	0	48	1.00
377056--377174	42	2.8	42	89	0	184	8	44	2	44	1.47
377089--377164	12	6.9	11	75	15	52	9	48	2	39	1.49
377080--377165	24	3.8	24	72	17	85	10	45	2	41	1.51
377071--377141	18	3.6	18	69	20	52	9	43	2	43	1.52
381039--381522	130	3.7	128	77	6	379	33	12	25	28	1.92
381336--381444	51	2.1	51	86	0	146	32	12	23	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381039--381521	260	1.9	258	82	5	614	33	12	25	28	1.92
381387--381678	79	3.7	79	84	4	369	31	14	26	28	1.94
381404--381630	76	2.9	75	87	4	328	31	14	26	28	1.95
381614--381779	51	3.3	50	83	4	174	32	11	25	30	1.91
388528--388695	51	3.3	51	84	4	180	30	26	10	32	1.90
388631--388923	79	3.7	79	85	4	387	28	25	14	31	1.95
388865--388983	51	2.3	52	82	1	159	30	26	12	30	1.93
388787--389273	130	3.7	130	78	4	489	28	25	12	33	1.93

Tables:   1   2   3

The End!