genome.fa.s594.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold594
Parameters: 2 7 7 80 10 50 1000
Length:  328579

Tables:   1   2   3   

This is table  3  of  3  ( 269 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305576--305642	36	1.9	35	85	11	93	31	23	11	32	1.91
306082--306170	45	1.9	46	84	8	119	37	8	24	29	1.86
306139--306193	21	2.5	22	94	5	103	36	10	25	27	1.89
306181--306211	10	3.1	10	90	0	53	41	6	29	22	1.78
306235--306270	18	2.0	18	94	0	63	30	11	16	41	1.83
306235--306370	53	2.6	53	95	2	238	26	17	18	37	1.93
306358--306410	18	2.8	19	78	16	65	30	15	13	41	1.85
306358--306413	20	2.9	20	78	7	71	30	16	12	41	1.85
306448--306487	21	1.9	21	85	10	55	40	10	12	37	1.77
306815--306883	31	2.2	31	97	0	129	39	18	5	36	1.75
307493--307672	87	2.1	87	92	2	299	32	6	27	34	1.81
308386--308429	22	2.0	21	83	12	54	45	6	11	36	1.67
308548--308572	13	1.9	13	100	0	50	32	16	16	36	1.90
308527--308591	32	2.0	33	90	3	105	27	15	16	40	1.89
308639--308663	13	1.9	13	100	0	50	36	16	16	32	1.90
308652--308704	20	2.7	20	100	0	106	30	11	22	35	1.89
309167--309250	33	2.6	31	83	9	107	29	19	25	26	1.98
310315--310369	20	2.8	20	85	0	83	25	18	12	43	1.85
310353--310382	13	2.3	13	100	0	60	30	16	13	40	1.87
310400--310450	20	2.5	20	90	6	77	27	17	13	41	1.87
310316--310512	81	2.4	81	88	3	288	27	17	14	40	1.89
312081--312350	51	5.3	50	71	15	158	29	26	12	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312182--312250	28	2.4	28	85	7	86	24	24	20	30	1.99
312238--312354	48	2.4	51	85	7	161	30	26	12	29	1.93
312290--312591	79	3.8	78	83	4	333	28	26	13	31	1.94
312290--312591	158	1.9	156	83	5	394	28	26	13	31	1.94
324622--324662	21	2.0	22	90	9	68	41	17	21	19	1.90
325536--325700	52	3.2	50	83	3	195	42	14	16	26	1.87
325758--325811	20	2.6	21	91	2	83	31	18	11	38	1.86

Tables:   1   2   3

The End!