Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold648
Parameters: 2 7 7 80 10 50 1000
Length:  536246

Tables:   1   2   3   4   

This is table  4  of  4  ( 400 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
478512--478536
13
1.9
13
100
0
50
36
16
16
32
1.90
479386--479548
74
2.2
74
82
3
186
44
6
5
43
1.54
480987--481052
7
10.3
7
75
18
54
45
3
7
43
1.47
480981--481034
12
4.3
12
81
6
63
44
1
5
48
1.37
481887--481934
20
2.3
21
82
10
62
33
0
2
64
1.05
481892--481949
20
2.9
20
81
0
62
34
3
3
58
1.32
489991--490443
238
1.9
238
97
0
861
24
18
16
41
1.90
496759--496826
2
34.0
2
100
0
136
0
50
0
50
1.00
505376--505553
42
4.2
42
97
0
329
33
9
12
44
1.75
508762--508804
21
2.0
22
81
4
52
16
16
32
34
1.91
515157--515327
87
1.9
89
92
3
292
23
21
12
43
1.86
517091--517148
28
2.1
28
83
3
73
24
12
27
36
1.91
522153--522205
25
2.2
25
86
3
72
67
3
5
22
1.28
523095--523184
40
2.3
39
78
5
92
46
8
15
28
1.76
523842--524021
51
3.5
51
80
3
195
28
25
12
33
1.92
524005--524080
28
2.8
28
85
2
91
23
28
18
28
1.98
523957--524235
107
2.6
107
81
4
321
27
24
14
33
1.94
524113--524188
28
2.8
26
82
9
82
22
30
21
26
1.99
524171--524289
51
2.4
51
88
4
179
30
27
11
30
1.92
524222--524439
79
2.8
78
84
5
269
27
24
13
33
1.93
529969--530074
16
6.8
15
80
15
94
54
0
0
45
0.99
529968--530074
32
3.4
31
81
13
121
54
0
0
45
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
529970--530074
48
2.2
46
83
6
138
54
0
0
45
0.99
529978--530067
16
5.8
16
87
8
116
53
0
0
46
1.00
530429--530490
19
3.3
17
76
17
52
54
0
1
43
1.09
530495--530538
18
2.6
16
85
10
52
75
0
0
25
0.81
530486--530546
31
2.0
31
86
0
86
72
3
0
24
1.00
530658--530701
21
2.1
21
91
8
72
61
0
2
36
1.09
530718--530783
26
2.4
27
79
18
75
65
0
1
33
1.02
530831--530888
29
1.9
31
86
6
84
51
0
0
48
1.00
531193--531244
8
6.0
8
75
16
50
65
0
1
32
1.04
531194--531246
18
3.0
18
88
2
81
67
0
1
30
1.01
531177--531230
23
2.3
23
78
12
56
68
0
0
31
0.90
531187--531308
9
12.1
10
68
22
69
59
0
0
38
1.09
533236--533289
20
2.6
21
82
8
65
38
3
7
50
1.48
534017--534180
54
3.1
53
83
6
206
39
1
4
55
1.27
534501--534568
22
3.1
22
71
0
64
33
10
7
48
1.65
534850--534907
22
2.6
22
83
2
71
27
8
10
53
1.64
534712--534958
135
1.8
136
80
4
302
36
12
10
40
1.76
535162--535210
22
2.2
22
85
0
62
34
2
4
59
1.28

Tables:   1   2   3   4

The End!