genome.fa.s67.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold67
Parameters: 2 7 7 80 10 50 1000
Length:  428520

Tables:   1   2   3   4   

This is table  3  of  4  ( 376 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263605--263675	20	3.5	20	75	7	63	35	9	14	40	1.79
264588--264641	22	2.5	22	93	3	92	18	9	9	62	1.51
277656--277693	14	2.8	13	88	11	58	89	7	2	0	0.57
277656--277705	9	5.7	9	77	11	50	86	8	4	2	0.78
277655--277705	17	3.0	17	85	5	59	84	9	3	1	0.83
278925--279193	28	9.5	28	84	8	309	27	30	18	23	1.98
278925--279193	83	3.2	83	84	8	348	27	30	18	23	1.98
278925--279194	55	4.8	56	83	9	320	27	30	18	23	1.98
279805--279879	20	3.8	20	78	0	78	34	12	12	41	1.79
282088--282125	2	19.0	2	94	0	67	50	2	0	47	1.15
282647--282746	2	50.0	2	100	0	200	0	50	0	50	1.00
283489--283530	21	2.0	21	86	9	59	54	2	2	40	1.26
283485--283544	22	2.7	21	74	7	57	56	3	1	38	1.26
283630--283664	14	2.6	13	91	8	61	71	0	0	28	0.86
283652--283767	31	3.8	29	75	18	110	55	0	0	43	1.11
284807--284891	32	2.7	32	77	3	100	48	7	5	38	1.55
285003--285042	21	1.9	21	85	10	55	40	0	2	57	1.12
285494--285525	16	2.1	16	94	5	57	65	0	0	34	0.93
285554--285584	16	1.9	16	93	0	53	87	0	6	6	0.68
285978--286016	20	2.0	20	89	0	60	41	10	2	46	1.51
290273--290334	29	2.1	29	88	5	90	35	0	1	62	1.05
290561--290618	7	8.0	7	76	14	55	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290566--290618	15	3.6	15	84	5	81	69	0	0	30	0.88
290566--290621	14	3.9	14	88	6	85	67	0	0	32	0.91
294077--294101	13	1.9	13	100	0	50	32	0	4	64	1.12
297244--297277	15	2.2	16	89	5	52	0	8	2	88	0.62
298125--298169	23	2.0	23	86	0	63	40	4	13	42	1.64
304876--304922	21	2.2	21	77	7	51	46	6	0	46	1.28
305291--305372	5	16.4	5	74	5	58	51	1	4	42	1.31
305291--305372	35	2.3	35	76	0	92	51	1	4	42	1.31
309567--309642	20	3.8	20	78	1	80	43	9	15	31	1.79
314138--314199	27	2.3	27	97	0	115	22	19	12	45	1.84
322609--322658	22	2.3	21	80	10	57	80	4	12	4	1.00
323639--323672	14	2.5	13	90	9	59	29	32	5	32	1.81
324137--324197	30	2.1	29	84	9	79	22	26	13	37	1.91
324182--324243	32	1.9	32	93	0	106	24	30	16	29	1.96
324188--324267	32	2.5	32	85	2	99	26	32	15	26	1.95
324407--325264	52	16.5	52	79	5	689	24	24	15	35	1.94
324417--325264	104	8.2	104	79	1	768	24	24	15	35	1.94
324407--325264	156	5.5	156	81	2	819	24	24	15	35	1.94
328648--328773	52	2.4	52	91	0	207	30	17	17	34	1.93
328648--328793	52	2.8	51	86	4	204	31	17	17	33	1.93
328849--328873	13	1.9	13	100	0	50	32	16	16	36	1.90
329533--329588	20	2.7	21	80	5	69	41	10	17	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
332383--332420	12	3.1	12	92	3	58	89	10	0	0	0.49
332383--332420	13	3.0	13	88	7	60	89	10	0	0	0.49
333368--333650	31	9.1	30	77	11	239	23	31	15	30	1.95
333593--334023	96	4.3	95	76	15	354	20	34	12	32	1.90
333446--334023	33	17.5	33	77	14	402	20	33	13	32	1.91
333446--334018	68	8.7	65	75	16	334	20	33	13	31	1.92
334009--334192	33	5.7	32	86	7	241	27	34	19	19	1.96
334019--334192	65	2.7	64	87	5	255	28	34	18	18	1.95
334009--334192	98	1.9	95	88	5	280	27	34	19	19	1.96
334185--334699	49	10.7	49	87	5	707	25	26	18	30	1.98
334774--335017	92	2.6	92	92	2	380	24	25	18	31	1.97
334774--335070	43	6.1	49	73	15	258	24	25	17	32	1.97
334896--334963	21	3.2	21	67	19	59	26	27	17	27	1.98
334467--335137	309	2.2	308	94	1	1153	24	25	16	34	1.95
335021--335147	67	1.9	68	85	1	175	23	24	12	39	1.89
337052--337127	27	2.7	29	86	6	104	21	19	34	25	1.96
337115--337233	51	2.3	53	84	7	145	34	11	22	31	1.90
339608--339633	13	2.0	13	100	0	52	38	15	15	30	1.88
339587--339653	33	2.0	33	88	0	98	43	14	14	26	1.85
339673--339740	19	3.9	18	76	23	83	38	14	11	35	1.83
339695--339719	13	1.9	13	100	0	50	32	16	16	36	1.90
339676--339738	32	2.0	32	96	0	117	36	15	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339920--339947	13	2.2	13	100	0	56	64	7	7	21	1.43
340587--341836	55	21.9	55	85	8	1430	23	19	29	27	1.98
340919--341003	27	3.1	27	61	15	66	23	18	29	28	1.98
340587--341865	231	5.6	225	85	7	1458	23	19	29	27	1.98
341635--341723	29	3.2	29	60	15	69	19	19	33	28	1.96
342707--342764	13	3.9	13	73	26	53	32	13	13	39	1.85
342687--342786	33	3.0	33	94	0	164	32	12	14	42	1.82
342720--342788	20	3.8	19	73	26	78	28	11	11	47	1.75
342827--342851	13	1.9	13	100	0	50	32	16	16	36	1.90
342860--342988	52	2.5	52	94	0	222	34	17	18	29	1.94
350043--350080	7	4.9	8	84	15	53	89	10	0	0	0.49
350041--350080	12	3.4	12	86	6	55	87	12	0	0	0.54
350042--350071	14	2.1	14	100	0	60	93	6	0	0	0.35
351028--351304	31	8.8	31	78	12	248	23	30	16	29	1.96
351031--351304	62	4.4	62	81	6	279	24	30	16	28	1.96
351106--351683	31	17.5	34	78	11	392	20	33	14	32	1.92
351285--351678	33	11.7	33	80	11	376	20	34	12	32	1.91
351253--351683	96	4.3	95	76	15	363	20	34	12	32	1.91
351411--351676	68	3.9	68	79	11	267	20	34	12	32	1.90
351669--351852	33	5.7	32	88	7	259	27	35	18	19	1.95
351679--351852	65	2.7	64	90	5	273	28	35	17	18	1.94
351669--351852	98	1.9	95	90	5	289	27	35	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351845--352668	49	16.7	49	77	12	728	25	26	17	31	1.97
352269--352731	55	8.9	52	68	13	213	24	25	15	34	1.95
352178--352368	95	2.0	92	91	5	303	25	25	17	31	1.97
352443--352624	43	4.1	43	81	8	229	25	25	18	30	1.98
352434--352677	92	2.6	92	90	2	371	25	25	16	31	1.96
352556--352623	21	3.2	21	65	19	50	27	27	16	27	1.97
352127--352797	309	2.2	308	93	2	1146	24	25	16	33	1.96
352681--352807	67	1.9	68	85	4	177	23	25	13	37	1.91
353597--353621	13	1.9	13	100	0	50	36	16	16	32	1.90
353577--353643	33	2.0	33	88	0	98	32	11	14	40	1.83
353684--353708	13	1.9	13	100	0	50	32	16	16	36	1.90
353697--353845	52	2.9	51	87	4	217	32	17	18	31	1.94
357896--357963	34	2.0	34	100	0	136	38	14	23	23	1.92
358611--358663	19	2.7	20	88	5	81	26	15	13	45	1.82
358560--358712	68	2.2	70	88	3	229	24	15	16	43	1.87
361013--361246	78	3.0	78	79	3	254	24	25	15	34	1.95
372663--372690	13	2.2	13	100	0	56	39	17	14	28	1.89
372645--372710	33	2.0	33	88	5	98	40	13	15	30	1.85
377171--377213	9	4.8	9	85	0	59	88	4	4	2	0.70
377170--377213	18	2.4	18	92	0	70	86	4	4	4	0.79
378037--378100	32	2.0	32	84	6	85	34	10	14	40	1.80
378143--378167	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378176--378304	52	2.5	52	94	0	231	37	17	17	28	1.92
384093--384131	15	2.7	15	92	4	62	0	2	12	84	0.72
402097--402141	19	2.3	20	82	17	60	86	4	4	4	0.78
402098--402160	18	3.3	18	82	6	63	84	3	11	1	0.81
402106--402158	15	3.6	14	80	14	54	83	1	13	1	0.82
402098--402160	9	6.8	9	78	10	56	84	3	11	1	0.81
403157--403399	94	2.6	93	87	3	344	27	28	17	25	1.97
403350--403922	61	9.4	61	86	3	735	25	26	20	28	1.99
404507--404640	49	2.7	50	88	1	207	25	16	16	41	1.88
406978--407209	79	2.9	79	88	1	340	25	22	14	36	1.93

Tables:   1   2   3   4